Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_M12
(917 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 32 0.56
07_01_0862 - 7172083-7172931 30 3.0
12_02_0674 - 21745321-21746223,21746229-21747608 25 3.4
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 29 5.2
11_01_0463 + 3594527-3594862 29 6.8
06_02_0074 - 11461300-11461681,11461744-11462009 29 6.8
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 29 6.8
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 29 6.8
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 28 9.0
09_02_0184 - 5485231-5485743 28 9.0
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052... 28 9.0
05_03_0165 - 9083591-9084844 28 9.0
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 32.3 bits (70), Expect = 0.56
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 409 AGPRTALHTAGGGTPSRTLARTSSPGALISGALTSLTLP 293
A P A G GTP+ T+ PGA + G T+ T+P
Sbjct: 276 ATPTPAAMMPGTGTPTTPTTATAMPGATMPGTATATTMP 314
>07_01_0862 - 7172083-7172931
Length = 282
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +1
Query: 724 PXXIXPPLPIXXVILLXP*NXPIXXXYXLKLTPXPPXLXPPSXXFXSPPXP 876
P PPLP L P P + TP PP L PP PP P
Sbjct: 169 PLLYPPPLPPKKKPLPPPSPPPQPPLPEKENTPLPPLLLPPKKKPLPPPSP 219
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 24.6 bits (51), Expect(2) = 3.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 826 PPXLXPPSXXFXSPPXPLRS 885
PP PP F PP PL S
Sbjct: 444 PPKSSPPPVKFPLPPVPLSS 463
Score = 23.4 bits (48), Expect(2) = 3.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 811 KLTPXPPXLXPP 846
K+TP PP L PP
Sbjct: 415 KITPTPPTLAPP 426
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = -1
Query: 512 G*YVLXRHETAXSSHRVXNVXAVPAASKAHTGPAGGATH--RPAHSGRWHPLADPRSDQL 339
G YV + A +++++ N+ V H PA G A+ +W P DP + L
Sbjct: 75 GRYVDDSSQAARTNNKITNLQ-VSFVGHGHDTPADGEGQFADAAYPAKWKPDQDPSTPSL 133
Query: 338 TRGSHI--RCADFFDAPQS-RWNER*TG 264
H+ A F DA +W+ R G
Sbjct: 134 VVAHHLPNGNAPFIDAAYPVKWSPRADG 161
>11_01_0463 + 3594527-3594862
Length = 111
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +2
Query: 290 IGERQRSQRTGYESPG*AGPSEGPRGGATARCVQGGAWPRR 412
+G R GY + AG E RGG T G W R
Sbjct: 12 LGAASTRVREGYRAATQAGVEEEKRGGRTGATASGDRWEER 52
>06_02_0074 - 11461300-11461681,11461744-11462009
Length = 215
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 257 RLRQSTVHSNEIGERQRSQRTGYESPG*AGPSEGPRGGATARCVQGGAWPRR 412
RLR ++ + G R R +RT E AG ++G G GG W RR
Sbjct: 77 RLRMASKEATRAGWRGRGRRTLTER---AGETDGDGGSGEGGECGGGGWRRR 125
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = -3
Query: 408 RGHAPPCTQRAVAPPRGPSLGPA----HPGLSYP 319
RG PP PRG S PA HPG YP
Sbjct: 202 RGFPPPLPSPGAGAPRGGSATPAMIPGHPGAFYP 235
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 455 VXAVPAASKAHTGPAGGATHRPAHS-GRWHPLADPRSDQLTRGSHIRCADFFD 300
V +VP AS A + A GAT R HS G +PL +S HI+ +F D
Sbjct: 260 VFSVPLASTATSHSATGATDRDYHSLGSTNPLPIAKSTNCA-DVHIQPCEFKD 311
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 412 PAGPRTALHTAGGGTPSRTLARTSSPG 332
P P TA GG+P RT+ S+PG
Sbjct: 110 PRAPATAATVPQGGSPRRTVPAQSAPG 136
>09_02_0184 - 5485231-5485743
Length = 170
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 362 RGGATARCVQGGAWPRRQDQCAPLMQP 442
+GG AR GG W RR Q A L+ P
Sbjct: 116 KGGGGARQGYGGGWRRRSRQAAVLVGP 142
>05_04_0340 -
20404703-20404771,20404908-20405093,20405191-20405292,
20405400-20405464,20405551-20405631,20405983-20406055,
20406147-20406248,20406437-20406556,20406690-20406800,
20406889-20406960,20407228-20407341,20407423-20407521,
20408472-20408849
Length = 523
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 315 APDMRAP-GELVRARVREGVPPPAVCRAVRGPAGRTSV 425
APD RA + VR VRE PP A R PA +V
Sbjct: 26 APDARAAVRDAVRVAVREAEPPQAPALPPRAPAPAVAV 63
>05_03_0165 - 9083591-9084844
Length = 417
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 458 NVXAVPAASKAHTGPAGGATHRPAHSGRWHPLADPRSDQLTRGSHIRCA 312
++ A+ A+ + P H PAH PL DPRS G +R A
Sbjct: 45 SLAALRASFQLAEPPRASHVHVPAHLLDLRPLTDPRSQMRLLGGCVRGA 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,657,139
Number of Sequences: 37544
Number of extensions: 442790
Number of successful extensions: 1695
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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