Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M12
         (917 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122074-1|AAM52586.1|  994|Drosophila melanogaster AT16994p pro...    30   5.1  
AE013599-641|AAF59100.3|  994|Drosophila melanogaster CG11641-PA...    30   5.1  
AE013599-1994|AAM68540.1|  461|Drosophila melanogaster CG30475-P...    29   6.8  
BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p pro...    29   8.9  
AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisom...    29   8.9  
AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-P...    29   8.9  

>AY122074-1|AAM52586.1|  994|Drosophila melanogaster AT16994p
           protein.
          Length = 994

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -2

Query: 454 SSXFRLH--QRRTLVLPAGPRTALHTAGGGTPSRTLARTSSPGALISGALTSLTLPNLVG 281
           S  FR H  Q   L L   PR      G G  S T   TSS GA    A  S    N++ 
Sbjct: 658 SPLFRTHSPQGHALSLGGSPRLERDYLGNGPSSGTATSTSSCGA--PTAAGSSATANVLS 715

Query: 280 MNGRLAQSAFIHTVTKTIQTKT 215
              RL  S    T+TK++   T
Sbjct: 716 SINRLNASNGELTITKSLGAPT 737


>AE013599-641|AAF59100.3|  994|Drosophila melanogaster CG11641-PA
           protein.
          Length = 994

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -2

Query: 454 SSXFRLH--QRRTLVLPAGPRTALHTAGGGTPSRTLARTSSPGALISGALTSLTLPNLVG 281
           S  FR H  Q   L L   PR      G G  S T   TSS GA    A  S    N++ 
Sbjct: 658 SPLFRTHSPQGHALSLGGSPRLERDYLGNGPSSGTATSTSSCGA--PTAAGSSATANVLS 715

Query: 280 MNGRLAQSAFIHTVTKTIQTKT 215
              RL  S    T+TK++   T
Sbjct: 716 SINRLNASNGELTITKSLGAPT 737


>AE013599-1994|AAM68540.1|  461|Drosophila melanogaster CG30475-PA
           protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 340 SWSERGSARGCHRPLCAGRCVAPPAGPVC 426
           S +++GS   C+ P C  RC +P  G  C
Sbjct: 65  SANQQGSGNLCYSPTCRSRCSSPCPGSPC 93


>BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p
           protein.
          Length = 1250

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 233 FSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPG*AGPSEGPRGGATARCVQGGAW 403
           +  C+    L ++T + N    ++     G    G  GP  GP GG + R    G W
Sbjct: 737 YKTCLPCDNLFRTTFNINLDSVKKVGGIVGEVRGGGGGPGPGPGGGGSGRGAGSGGW 793


>AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA
           topoisomerase III alpha protein.
          Length = 1250

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 233 FSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPG*AGPSEGPRGGATARCVQGGAW 403
           +  C+    L ++T + N    ++     G    G  GP  GP GG + R    G W
Sbjct: 737 YKTCLPCDNLFRTTFNINLDSVKKVGGIVGEVRGGGGGPGPGPGGGGSGRGAGSGGW 793


>AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-PA
           protein.
          Length = 1250

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 233 FSDCMDKSRLRQSTVHSNEIGERQRSQRTGYESPG*AGPSEGPRGGATARCVQGGAW 403
           +  C+    L ++T + N    ++     G    G  GP  GP GG + R    G W
Sbjct: 737 YKTCLPCDNLFRTTFNINLDSVKKVGGIVGEVRGGGGGPGPGPGGGGSGRGAGSGGW 793


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,110,314
Number of Sequences: 53049
Number of extensions: 726793
Number of successful extensions: 2520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2516
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4505424660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)