Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M12
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical...    31   1.5  
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr...    29   6.2  
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin...    29   6.2  
U97551-5|AAB52858.1|  169|Caenorhabditis elegans Groundhog (hedg...    28   8.1  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    28   8.1  

>AF068708-11|AAC17757.1|  136|Caenorhabditis elegans Hypothetical
           protein C18G1.1 protein.
          Length = 136

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 252 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 148
           +S+  LK Y +KP R    TE++ +H+RT + I+L
Sbjct: 45  ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79


>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 454 SSXFRLHQRRTLVLPAGPRTALHTAGGGTPSRTLARTSSPGALISG 317
           SS    H RR      G  TA  T GGGT   T   +S   A  SG
Sbjct: 28  SSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTASSGAPAASSG 73


>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 454 SSXFRLHQRRTLVLPAGPRTALHTAGGGTPSRTLARTSSPGALISG 317
           SS    H RR      G  TA  T GGGT   T   +S   A  SG
Sbjct: 76  SSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTASSGAPAASSG 121


>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
           protein H39E23.1b protein.
          Length = 1096

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 454 SSXFRLHQRRTLVLPAGPRTALHTAGGGTPSRTLARTSSPGALISG 317
           SS    H RR      G  TA  T GGGT   T   +S   A  SG
Sbjct: 28  SSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTASSGAPAASSG 73


>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
           protein H39E23.1a protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 454 SSXFRLHQRRTLVLPAGPRTALHTAGGGTPSRTLARTSSPGALISG 317
           SS    H RR      G  TA  T GGGT   T   +S   A  SG
Sbjct: 76  SSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTASSGAPAASSG 121


>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 1096

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 454 SSXFRLHQRRTLVLPAGPRTALHTAGGGTPSRTLARTSSPGALISG 317
           SS    H RR      G  TA  T GGGT   T   +S   A  SG
Sbjct: 28  SSTSSSHHRRPAQEMNGTSTATATGGGGTSGATTTASSGAPAASSG 73


>U97551-5|AAB52858.1|  169|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 4 protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 180 RHHRTAYEIVLIRNTNVARLSNYQKRANCRFQAHS 76
           RH+  AYEIVL     +   SNY   + C+F+ +S
Sbjct: 78  RHYGVAYEIVLAPKGFILN-SNYNGSSVCKFETNS 111


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +2

Query: 251 KSRLRQSTVHSNEIGERQRSQRTGYESPG*AGPSEGPRGGATARCVQGG 397
           K  L  S    N+  ER+R+ R+  E P   GP  G RGG      QGG
Sbjct: 310 KQVLDISITFRNDRPERERNDRS--ERPQRGGPRGGGRGGGRGGQRQGG 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,189,970
Number of Sequences: 27780
Number of extensions: 341204
Number of successful extensions: 1065
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)