Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M11
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    30   0.51 
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    29   0.89 
SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyc...    27   2.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   3.6  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   6.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   8.3  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   8.3  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 273 TLPSQAPSAQVQSVIQP-NQQSVIQTASNIQSVQIPKGNV 389
           T  SQ  SA V  +  P N Q++++  S  Q +Q+P+ NV
Sbjct: 599 TPTSQTESASVPQIANPPNSQNLVKEKSPQQYIQVPQSNV 638


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 306 QSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPS-SVIHTTQGTLQTLQIKPEPNTLVN 482
           +S+I+  +Q V Q     Q VQ    N    S+   + +  T    QT ++KP PNT + 
Sbjct: 247 KSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSPNTTIR 306

Query: 483 T 485
           T
Sbjct: 307 T 307


>SPAC22F3.02 |atf31||transcription factor Atf31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 209

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 769 KRELXLMKNRXTAXECRXKKKEYXXCPENQ 858
           K+ +   +NR  A +CR KKK+Y    ++Q
Sbjct: 123 KQSMLKARNRQAAQKCRIKKKKYLQTLQDQ 152


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +3

Query: 264 VQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 443
           V LT P +  S    SV+      V++ A +   ++ P GN    +   +    T  T +
Sbjct: 105 VSLTRPLKKSSTTNLSVLG---NLVLKVAPS--KIRAPAGNHSSTTANRTTSTPTTTTAR 159

Query: 444 TLQIKPEPNTLVNTQGQSCSDES 512
           T +  P P    NT  QS S+ +
Sbjct: 160 TTRTTPRPTATTNTSNQSTSNST 182


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 345 TASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSG 524
           T S I + Q+     ++  +   + + TQG  +  +I  + +T++N QG+  ++     G
Sbjct: 156 TESKISNSQLEYQQRLINERQGEIENLTQGINELNEIFRDLSTIINEQGELVTNIEYNVG 215

Query: 525 DESPKRK 545
           + S   K
Sbjct: 216 NTSTNTK 222


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 769 KRELXLMKNRXTAXECRXKKKEY 837
           KR+  L +NR  A +CR +KK++
Sbjct: 474 KRKSFLERNRQAALKCRQRKKQW 496


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 584  NFK*PWEEQKLQSFQLELYKLTAD 655
            +FK    EQ+ QSFQ+EL  LT++
Sbjct: 959  SFKKKKNEQRSQSFQVELSNLTSE 982


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 304 CSLLFNLINNQ*YKQHPISNLYRYQREML 390
           CSL  N      Y QHP+ N Y  + E++
Sbjct: 522 CSLPENFRRTTLYLQHPVFNRYHSETELM 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,344
Number of Sequences: 5004
Number of extensions: 58005
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)