Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_M11
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 36 0.057
11_06_0328 - 22395911-22396480 33 0.30
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 30 2.8
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 29 3.8
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 29 3.8
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 5.0
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 29 6.6
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 6.6
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 35.5 bits (78), Expect = 0.057
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 426 TQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSYRKILN 593
T GT L K + + ++ + CS SCGSG E R +TR+ ++ LN
Sbjct: 174 THGTKTPLNPKTQRRNAIESKDK-CSKSSCGSGSEKSNETLRIAVTRKYGFQNFLN 228
>11_06_0328 - 22395911-22396480
Length = 189
Score = 33.1 bits (72), Expect = 0.30
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 408 SSVIHTTQGTLQTLQIKPEPNTLVNTQGQSCSDESCGSGDESPKRKYREML 560
+ + TT G +T + E T G CS E+CG GDE + ++M+
Sbjct: 25 AGAVITTTGESETTTVA-EAAAAETTTGGKCSGEACGGGDEQKQPSAKKMM 74
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 495 SCSDESCGSGDESPKRKYREMLTRRPSYRKILNDLGRSRNCSHSSWNYT 641
SCS +S SG SP+++Y E R+PS + + SHS +Y+
Sbjct: 270 SCSPDSQRSGSYSPRKRYSE---RKPSRSRSSGKRHSRESYSHSRSSYS 315
>11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 489 GQSCSDESCGSGDESPKRKYREMLTRRPSYRK 584
G+S D+SCG GD++ +K R+ L R + RK
Sbjct: 1042 GESSDDDSCG-GDKAKPKKGRKPLGNREAVRK 1072
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 267 QLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSKPSSVIHTTQGTLQ 443
Q P A SAQ+ + SV QTA +SVQ + +++ V+KP T T Q
Sbjct: 321 QSVAPPMAHSAQLYASQSNINSSVSQTAPTRESVQHGRVHMVSVAKPPVSTQPTTSTNQ 379
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 726 SILIRCILHYGSAPRRSGHGQRVQSAVSLYSSSWNDCNFCSSQGHLKFFDKTD 568
S+LIR + Y G + + +LYS +DCN G + D TD
Sbjct: 582 SVLIRMKITYLGKVNMLGWQSNISAWTTLYSEPVHDCNIYGYCGPNSYCDNTD 634
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 462 EPNTLVNTQGQSCSDESCGSGDESP 536
EP TQG C E+C SG+ SP
Sbjct: 600 EPANENATQGTKCVPEACSSGENSP 624
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 28.7 bits (61), Expect = 6.6
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 10/142 (7%)
Frame = +3
Query: 249 VVTSIVQLTLPSQAPSAQVQSVIQPNQQSVIQTASNIQSVQIPKGNVILVSK---PSSVI 419
V+ S V LT+ + AQ + + Q +++ + + G LV + P + I
Sbjct: 2766 VLESEVPLTVVPEPTRAQCSELDREVSQLILELQGGLSAALESLGEYALVLQQVLPVNYI 2825
Query: 420 HTTQ--GTLQTLQIKPEPNT-----LVNTQGQSCSDESCGSGDESPKRKYREMLTRRPSY 578
T+ G Q LQ+ + L Q + G G +++YR++L + SY
Sbjct: 2826 TTSPVTGWAQALQLSVSSGSEDLLPLAKRQAAEVIAKVQGEGINLVQQRYRDLLNQMESY 2885
Query: 579 RKILNDLGRSRNCSHSSWNYTN 644
+ L R R+ +S + N
Sbjct: 2886 VVCIERLARERSELMNSIGFEN 2907
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,569,547
Number of Sequences: 37544
Number of extensions: 396001
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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