Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M10
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    29   4.6  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     28   8.1  

>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 256 PGTSLILPKTTTLMETATXLSTTVHITWTLPK-GDLTSSLPLSLG 387
           P T+  L +T + +     L TT   T TLPK  + T +L L LG
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKPAEATPTLGLGLG 551


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 234 PFPTVGWAKNGFGVIDHN*VSV 169
           P P+V W  NG  + DHN +S+
Sbjct: 75  PLPSVIWRVNGKSITDHNRISI 96


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 234 PFPTVGWAKNGFGVIDHN*VSV 169
           P P+V W  NG  + DHN +S+
Sbjct: 75  PLPSVIWRVNGKSITDHNRISI 96


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 234 PFPTVGWAKNGFGVIDHN*VSV 169
           P P+V W  NG  + DHN +S+
Sbjct: 75  PLPSVIWRVNGKSITDHNRISI 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,376
Number of Sequences: 27780
Number of extensions: 352932
Number of successful extensions: 787
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)