Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_M09
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 93 4e-20
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 93 4e-20
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 93 5e-20
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.50
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 28 2.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 4.7
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 4.7
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po... 26 6.1
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 93.5 bits (222), Expect = 4e-20
Identities = 67/165 (40%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 139 KRLTLPKHGMLDKTWAVCMHPRPSTGSPQSLRECLPPGDFPEESSEVCFD-RETKS*KIV 315
KR+ P H +LDK P+PS G P RECLP F + + RE K+ I+
Sbjct: 10 KRVAAPHHWLLDKLSGTYA-PKPSPG-PHKARECLPLIVFLRNRLKYALNGREVKA--IL 65
Query: 316 NQRLIKVDGES*D*PYLSCWIYGCCLN*ED**LFRLIYDVKGRFTIPPYHP*XXXXXXXX 495
QRLIKVDG+ + FRL+YD+KGRFT+
Sbjct: 66 MQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCK 125
Query: 496 KSXVWRPGPKNVPYLVTHDGRTIRYPXPLIKVNXSXQLDLATTXI 630
V + G K VP+LVTHDGRTIRYP PLIKVN + +L+L T I
Sbjct: 126 VKRV-QLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKI 169
Score = 93.5 bits (222), Expect = 4e-20
Identities = 70/176 (39%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Frame = +2
Query: 212 PGPHKVCASACPLVIFLRNRLKYALTGKRSPEKL*TNAS*RLMGKVRTDPTYPAGFMDVV 391
PGPHK PL++FLRNRLKYAL G R + + ++ GKVRTD T+P GFMDV+
Sbjct: 33 PGPHKA-RECLPLIVFLRNRLKYALNG-REVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90
Query: 392 SIEKTNDCFV*SMMLRADSQSHRITPEEAKYKL--V*SXXCGDPDLRMFRTW-*RMMAAP 562
S+EKT + F ++ HRIT EEAKYKL V G + T R + P
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 563 SATXTXLSKSTIPSS*TSQLXXLWXFIKFESGXLVYDHGXAVTWGRVGTIVSRXKH 730
L K + + FIKF++ V G GRVGTIV R H
Sbjct: 151 D----PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGR-NMGRVGTIVHREHH 201
Score = 33.5 bits (73), Expect = 0.041
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 120 GPKKHLKALNAPQAWDVGQNLGGVYAPE 203
GPKKHLK + AP W + L G YAP+
Sbjct: 4 GPKKHLKRVAAPHHW-LLDKLSGTYAPK 30
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 93.5 bits (222), Expect = 4e-20
Identities = 67/165 (40%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 139 KRLTLPKHGMLDKTWAVCMHPRPSTGSPQSLRECLPPGDFPEESSEVCFD-RETKS*KIV 315
KR+ P H +LDK P+PS G P RECLP F + + RE K+ I+
Sbjct: 10 KRVAAPHHWLLDKLSGTYA-PKPSPG-PHKARECLPLIVFLRNRLKYALNGREVKA--IL 65
Query: 316 NQRLIKVDGES*D*PYLSCWIYGCCLN*ED**LFRLIYDVKGRFTIPPYHP*XXXXXXXX 495
QRLIKVDG+ + FRL+YD+KGRFT+
Sbjct: 66 MQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCK 125
Query: 496 KSXVWRPGPKNVPYLVTHDGRTIRYPXPLIKVNXSXQLDLATTXI 630
V + G K VP+LVTHDGRTIRYP PLIKVN + +L+L T I
Sbjct: 126 VKRV-QLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKI 169
Score = 92.3 bits (219), Expect = 8e-20
Identities = 69/176 (39%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Frame = +2
Query: 212 PGPHKVCASACPLVIFLRNRLKYALTGKRSPEKL*TNAS*RLMGKVRTDPTYPAGFMDVV 391
PGPHK PL++FLRNRLKYAL G R + + ++ GKVRTD T+P GFMDV+
Sbjct: 33 PGPHKA-RECLPLIVFLRNRLKYALNG-REVKAILMQRLIKVDGKVRTDSTFPTGFMDVI 90
Query: 392 SIEKTNDCFV*SMMLRADSQSHRITPEEAKYKL--V*SXXCGDPDLRMFRTW-*RMMAAP 562
S++KT + F ++ HRIT EEAKYKL V G + T R + P
Sbjct: 91 SVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 563 SATXTXLSKSTIPSS*TSQLXXLWXFIKFESGXLVYDHGXAVTWGRVGTIVSRXKH 730
L K + + FIKF++ V G GRVGTIV R H
Sbjct: 151 D----PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGR-NMGRVGTIVHREHH 201
Score = 33.5 bits (73), Expect = 0.041
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 120 GPKKHLKALNAPQAWDVGQNLGGVYAPE 203
GPKKHLK + AP W + L G YAP+
Sbjct: 4 GPKKHLKRVAAPHHW-LLDKLSGTYAPK 30
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 93.1 bits (221), Expect = 5e-20
Identities = 70/176 (39%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Frame = +2
Query: 212 PGPHKVCASACPLVIFLRNRLKYALTGKRSPEKL*TNAS*RLMGKVRTDPTYPAGFMDVV 391
PGPHK PL++FLRNRLKYAL G R + + ++ GKVRTD T+P GFMDV+
Sbjct: 33 PGPHKA-RECLPLIVFLRNRLKYALNG-REVKAILMQRLIQVDGKVRTDSTFPTGFMDVI 90
Query: 392 SIEKTNDCFV*SMMLRADSQSHRITPEEAKYKL--V*SXXCGDPDLRMFRTW-*RMMAAP 562
S+EKT + F ++ HRIT EEAKYKL V G + T R + P
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 563 SATXTXLSKSTIPSS*TSQLXXLWXFIKFESGXLVYDHGXAVTWGRVGTIVSRXKH 730
L K + + FIKF++ V G GRVGTIV R H
Sbjct: 151 D----PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGR-NMGRVGTIVHREHH 201
Score = 91.9 bits (218), Expect = 1e-19
Identities = 66/165 (40%), Positives = 84/165 (50%), Gaps = 1/165 (0%)
Frame = +1
Query: 139 KRLTLPKHGMLDKTWAVCMHPRPSTGSPQSLRECLPPGDFPEESSEVCFD-RETKS*KIV 315
KR+ P H +LDK P+PS G P RECLP F + + RE K+ I+
Sbjct: 10 KRVAAPHHWLLDKLSGTYA-PKPSPG-PHKARECLPLIVFLRNRLKYALNGREVKA--IL 65
Query: 316 NQRLIKVDGES*D*PYLSCWIYGCCLN*ED**LFRLIYDVKGRFTIPPYHP*XXXXXXXX 495
QRLI+VDG+ + FRL+YD+KGRFT+
Sbjct: 66 MQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCK 125
Query: 496 KSXVWRPGPKNVPYLVTHDGRTIRYPXPLIKVNXSXQLDLATTXI 630
V + G K VP+LVTHDGRTIRYP PLIKVN + +L+L T I
Sbjct: 126 VKRV-QLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKI 169
Score = 33.5 bits (73), Expect = 0.041
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 120 GPKKHLKALNAPQAWDVGQNLGGVYAPE 203
GPKKHLK + AP W + L G YAP+
Sbjct: 4 GPKKHLKRVAAPHHW-LLDKLSGTYAPK 30
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.9 bits (64), Expect = 0.50
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 325 GVGSQFFRTSFPGQSILQTIPQENHQGASTRANFVGTRLTVSGAYTPPKFCPTS 164
G Q + +S+P Q+ IP ++ Q + T +NF+ + SG P+ CP +
Sbjct: 335 GKRRQKYESSYPYQTQSNQIPSQD-QYSDTDSNFLSYYFSASGPMYVPQKCPAT 387
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 277 LQTIPQENHQGASTRANFVGTR-LTVSGAYTPPKFCPTSHAWGALSAFKCFLGPSR 113
L+T +N+ +S G R L V+G Y+P S +W L + GPS+
Sbjct: 421 LETADAKNNDSSSASIEKRGMRSLAVNGVYSPAAAFLQSKSWSGLDSVDEGEGPSK 476
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 154 PKHGMLDKTWAVCMHPRPSTGSPQSLRECLPPGDFPEESSEVCFDR 291
P+ G +DK AV RP+ G+ Q+L + P ++S + D+
Sbjct: 133 PETGRVDKNLAVKAFHRPAAGNEQALPSDVRPPPVLKKSLDYLVDK 178
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1
Query: 718 PRXTSPAPSTLCTSRDSTGTHPSPXGLNXVFIIXPGPRNAYISPXAPG 861
P TSP+PS T R + P P P R + P PG
Sbjct: 561 PNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPLPPG 608
>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 439
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 277 LQTIPQENHQGASTRANFVGTRLTVSGAYTPPKFCP 170
++T+P N GA + V L V+G + PP P
Sbjct: 68 IETLPHRNAVGAHGGSYSVYNALAVAGGFLPPDHRP 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,062
Number of Sequences: 5004
Number of extensions: 69993
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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