Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M09
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...    81   8e-16
Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score = 81.4 bits (192), Expect = 8e-16
 Identities = 75/241 (31%), Positives = 102/241 (42%)
 Frame = +1

Query: 139 KRLTLPKHGMLDKTWAVCMHPRPSTGSPQSLRECLPPGDFPEESSEVCFDRETKS*KIVN 318
           KRL  P H MLDK   V    RP+ G P  LRE LP   F     +   +  T++ KI+ 
Sbjct: 9   KRLAAPSHWMLDKLGGV-FAVRPNPG-PHKLRESLPLSLFLRNRLKYALNY-TEAKKILT 65

Query: 319 QRLIKVDGES*D*PYLSCWIYGCCLN*ED**LFRLIYDVKGRFTIPPYHP*XXXXXXXXK 498
           QR+++VDG+                       FR++YD KGR+ +               
Sbjct: 66  QRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKV 125

Query: 499 SXVWRPGPKNVPYLVTHDGRTIRYPXPLIKVNXSXQLDLATTXIMXLHQV*VWGXCV*SR 678
             V R   K VP L T DGRTIRYP P +KVN +   +++T  I    +    G      
Sbjct: 126 KSV-RTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKF-EPGNLAYVT 183

Query: 679 GXRNLGPCGHHRVPRXTSPAPSTLCTSRDSTGTHPSPXGLNXVFIIXPGPRNAYISPXAP 858
           G RN+G  G     R   P  S +   +DS G H     ++ VF+I  G +     P   
Sbjct: 184 GGRNVGRVGIIG-HRERLPGASDIIHIKDSAG-HSFATRISNVFVIGKGNKALVSLPTGA 241

Query: 859 G 861
           G
Sbjct: 242 G 242



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 73/197 (37%), Positives = 96/197 (48%), Gaps = 3/197 (1%)
 Frame = +2

Query: 152 SPSMGCWTKLGRCVCTRDRQPGPHKVCASACPLVIFLRNRLKYALTGKRSPEKL*TNAS* 331
           +PS     KLG     R   PGPHK+  S  PL +FLRNRLKYAL    + +K+ T    
Sbjct: 13  APSHWMLDKLGGVFAVRPN-PGPHKLRESL-PLSLFLRNRLKYALNYTEA-KKILTQRVV 69

Query: 332 RLMGKVRTDPTYPAGFMDVVSIEKTNDCFV*SMMLRADSQSHRITPEEAKYKL--V*SXX 505
           R+ GKVRT   +P GFMDVV+IE+TN+ F      +     HRI   EA +KL  V S  
Sbjct: 70  RVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVR 129

Query: 506 CGDPDLRMFRTW-*RMMAAPSATXTXLSKSTIPSS*TSQLXXLWXFIKFESGXLVYDHGX 682
             +  + +  T   R +  P          TI  + ++Q   +   +KFE G L Y  G 
Sbjct: 130 TVNKGVPVLTTTDGRTIRYPDPHVKV--NDTIVFNISTQ--KITDSVKFEPGNLAYVTGG 185

Query: 683 AVTWGRVGTIVSRXKHP 733
               GRVG I  R + P
Sbjct: 186 R-NVGRVGIIGHRERLP 201



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +3

Query: 120 GPKKHLKALNAPQAWDVGQNLGGVYA 197
           GPKKHLK L AP  W +   LGGV+A
Sbjct: 3   GPKKHLKRLAAPSHWML-DKLGGVFA 27


>Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical
           protein T06E4.11 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 PRPSTGSPQSLRECLPPGDFPEE 267
           P PS  SPQ  ++ LPP  +PE+
Sbjct: 112 PMPSQYSPQQAQQQLPPSQYPEQ 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,824,939
Number of Sequences: 27780
Number of extensions: 428577
Number of successful extensions: 934
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)