Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M08
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0736 - 26784531-26785814                                         31   1.6  
11_06_0735 - 26780384-26781583                                         30   2.7  
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    28   8.3  

>11_06_0736 - 26784531-26785814
          Length = 427

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 280 GEISGINSGIATAY-DRSKHVVYLGWRGWDI 369
           G   G +S +  AY D SK VV +GW GW+I
Sbjct: 341 GRAWGESSRVVYAYTDMSKEVVPVGWDGWNI 371


>11_06_0735 - 26780384-26781583
          Length = 399

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 280 GEISGINSGIATAY-DRSKHVVYLGWRGWDI 369
           G   G +S +  +Y D SK VV +GW GW+I
Sbjct: 312 GRAWGDSSRVVYSYTDMSKEVVPIGWDGWNI 342


>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 246 FKNRFSLGQRRVTEKXGCWFGSRLRVGMDCAHYLLVLPLLGFR 118
           F+  +++     TE   C  G   R+G+ CAH L VL L+  +
Sbjct: 331 FEEEYNVIGNISTETASCSCGQFERIGILCAHALKVLDLMNIK 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,710,806
Number of Sequences: 37544
Number of extensions: 442347
Number of successful extensions: 1025
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)