Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M07
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   4.4  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   7.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   7.6  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   7.6  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 690 RRTGIPVXGQGRNRGSARGSFQGK 619
           +RT +P   +GR RG  RG  +G+
Sbjct: 130 KRTNVPGMSRGRGRGRGRGRGRGR 153


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 623 PWKLPRALPLFRPWPXTGIPVRLSPLREAW 712
           PW +  A+P FR W     P ++  L E W
Sbjct: 66  PWMIIDAMPYFRRWKIQ--PKKVPTLAEQW 93


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 652 VPTLAXYRNTCPPFSPSGSVALSHXSRCXYLSS 750
           + TL+   ++ P FSPS SV+    S   Y+SS
Sbjct: 156 ISTLSMSPSSTPVFSPSASVSSKVASSVSYVSS 188


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 563 STLKSEVAKPDRTIKIPGVFPWKLPRALPLFRPWPXTG 676
           STLK  +A  D  IKI G+F   L     +F  W   G
Sbjct: 161 STLKELIATGDEIIKIEGIFSGTLSY---IFNVWSPNG 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,136
Number of Sequences: 5004
Number of extensions: 59531
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)