Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M07
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.6  
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566...    30   2.6  
03_03_0262 + 15968884-15969687                                         29   4.6  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.1  
12_02_0299 - 17051570-17052474,17053542-17053755                       28   8.1  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.1  
06_03_1105 - 27634787-27636025                                         28   8.1  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 629 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 510
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>08_02_0980 +
           23255992-23256408,23256480-23256517,23256606-23256654,
           23256787-23256848,23256876-23256938,23256939-23257599
          Length = 429

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = -2

Query: 704 PEGEKGGQVFR*XARVGTGGAHEGASRGKRLVSL*SCRVSP 582
           PE E+GG V R     G GG   G  R  R VSL + +VSP
Sbjct: 110 PEPEEGGAVRRRCLEPGEGGGGSGCRRWCR-VSLDTLKVSP 149


>03_03_0262 + 15968884-15969687
          Length = 267

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 631 APSCAPPVPTLAXYRNTCPPFSPSGSVA-LSHXSRCXYLSSVXVXRSQLGCVXQTPPXXP 807
           A +  PP P  + +    P F P  S   ++  +     + +   R  LGC   TPP  P
Sbjct: 177 AAAATPPPPPPSSHHQQQPAFPPQPSAGPIAGVAAVVEAARIAALRRLLGCGGATPPPPP 236


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 345 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 500
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 611 PGVFPWKLPRALPLFRPWP 667
           P  FPW  P   PLF P+P
Sbjct: 331 PPSFPWPFPPLAPLFPPYP 349


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 294 NESAN---ARGEAVCVLGALPLPRSLTRCAR 377
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +3

Query: 573 SQRWRNPTGL*RYQAFSPGSSLVRSPCSDPGR 668
           S RWR   GL R  A SP  S   +P   PGR
Sbjct: 153 SSRWRELLGLKRAAAQSPKPSPSSAPARTPGR 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,158,044
Number of Sequences: 37544
Number of extensions: 477615
Number of successful extensions: 1517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)