Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M04
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 272 EIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENF 397
           E+P   K   +   ++ I  D    I + + G  VP+  E+F
Sbjct: 157 ELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESF 198


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 589 IDNQPAP*CFSLKFSSSK 536
           + NQ +  CFSLKF + K
Sbjct: 537 LGNQNSEMCFSLKFKNKK 554


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 785 SVFVSDITTSLTGRSFAPVTVISIFCTTSIPXKTLPKTT 669
           SV V+++TT++      P T +     T++P  +LP ++
Sbjct: 829 SVVVTNVTTTIN----TPTTSVISMSGTTVPITSLPASS 863


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 440 SLCTPPPQVSELVER 396
           S  TPPPQV E+ ++
Sbjct: 685 SATTPPPQVDEVDDK 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,900
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)