Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M03
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016671-3|AAB66109.2|  205|Caenorhabditis elegans Collagen prot...    29   4.7  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   6.2  
Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF016671-3|AAB66109.2|  205|Caenorhabditis elegans Collagen protein
           72 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/77 (27%), Positives = 25/77 (32%)
 Frame = -3

Query: 825 GGKPLXXRPX*XGGEPGXGXXXGXXAGARGXXRGXGEAGRGXPKXXXPAVFPGGXGXSSV 646
           GG+P    P    GEPG     G   G     R      +G      P   PG  G    
Sbjct: 82  GGRPGNNGPMGQPGEPGREGQPGKAGGPGSPGRDGIRGSKGSTGDKGPNGPPGQNGPPGW 141

Query: 645 EGQXKNLPXXLPPXXRG 595
            G+  N+     P  RG
Sbjct: 142 AGRDGNIGPQGTPGGRG 158


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 789 GGEPGXGXXXGXXAGARGXXRGXGEAGRG 703
           GG  G G   G   G RG   G G  GRG
Sbjct: 69  GGNNGGGGNWGGNGGGRGDWGGNGGGGRG 97


>Z82268-5|CAB05195.1|  304|Caenorhabditis elegans Hypothetical
           protein F52B11.4 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/61 (34%), Positives = 22/61 (36%)
 Frame = -3

Query: 819 KPLXXRPX*XGGEPGXGXXXGXXAGARGXXRGXGEAGRGXPKXXXPAVFPGGXGXSSVEG 640
           KP    P    G PG     G   GA G   G G  G   PK    A  PG  G +   G
Sbjct: 151 KPCPQGPAGAPGAPGPQGDAGAP-GAPGQGSGAGAPGPAGPKGASGA--PGNPGQAGAPG 207

Query: 639 Q 637
           Q
Sbjct: 208 Q 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,549
Number of Sequences: 27780
Number of extensions: 208953
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)