Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_M01
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   4.2  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    26   5.5  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   5.5  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    26   7.3  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 652 KKLIYXAKDYGXSVEVITNHGGSLLEDXRLVFGDRTXXRPYHRQKSGCS 506
           K L+    D G  V+ + +   SL+E  RL   +      YH   S CS
Sbjct: 437 KSLLEELPDLGKKVDDLCSFTNSLMEQVRLAVINGALLPIYHVDASACS 485


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 70  YNSK*IQICFISSLQLWCVLTQKFTDLL 153
           Y+ K +++  +S +  W VLTQ +TD L
Sbjct: 153 YHRKQMELQMLSFVAEWLVLTQHYTDAL 180


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 238 GKVFGTLGXNDDGLFGKAGYNR-EIFNDDRGKLTGQAYGTRVLGPGGDSTNYG 393
           GK  G +G + D     +  +R   F   RG     +Y TRV G GG  T+YG
Sbjct: 166 GKFIG-VGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 101 IKQICIHFELYQVSLLKTECQXLRIPYSES 12
           ++ ICIH   + +SL+  E + +R+P  +S
Sbjct: 146 LEGICIHESKHMLSLITKENRVVRVPKQDS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,369
Number of Sequences: 5004
Number of extensions: 52270
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)