Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_M01
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 30 1.9
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 4.4
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883 29 4.4
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 29 5.8
08_02_0640 - 19636968-19638230 29 5.8
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 29 5.8
07_01_0378 + 2826421-2826427,2827286-2827375,2827400-2827639,282... 28 7.7
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 291 SFSKESIIVXSQSAKDLASPHLFVPSDVSEGVALRIAR*SSNLPRNQK 148
++ +S + A DL++PHL +PS + +G L SS L N+K
Sbjct: 130 AYDDDSQLEVDFGALDLSTPHLTLPSSIGKGAHLVSRFMSSKLTDNKK 177
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 379 STNYGGRLDWANKNAQATIDLNRQI 453
S+ +GG L W N + ++T+D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
Length = 424
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 230 ICLSQVTSARVSP*GLPADRVIFRVIRRSVNFCVNTHQSCSEDIKQ---ICIHFELYQVS 60
+C+++ S P L +IF VI N ++T SCS ++ I H + Y S
Sbjct: 334 VCITERRSLSTDPLNLSTFNIIFEVISAYGNIGLSTGYSCSRQLQHQEGIACHEKAYNFS 393
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 232 GGGKVFG-TLGXNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDS-TNYGGRLD 405
G G G T+G +DDG K + + + G+ G A G R G GG N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236
Query: 406 WANK 417
+K
Sbjct: 237 PPHK 240
>08_02_0640 - 19636968-19638230
Length = 420
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 499 DPTHRSLMLSSQIXHRFVYLGQ*WLVHSCSPSLGVRRSWCCRL 371
DPT S++++ + +LV SC L VRR CCR+
Sbjct: 266 DPTWSSVLITDDDDTSTTDKKKLYLVESCGVLLMVRRKVCCRV 308
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 505 YPDPTHRSLMLSSQIXHRFVYL 440
YPDP HR+ LS Q H +V L
Sbjct: 251 YPDPQHRTTALSLQGGHMYVLL 272
>07_01_0378 +
2826421-2826427,2827286-2827375,2827400-2827639,
2827722-2828035,2828604-2828696,2828789-2828977
Length = 310
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Frame = +1
Query: 160 RKITRSAGNPQGDTLADVTWDKQMGGGKVFGTLGXN---DDGLFGKAGYNREIFNDDRGK 330
R ++ + NP + W + G G +G G N G FG + ++ +
Sbjct: 82 RNLSANVNNPVSRPMPQRPWQQTSGYGNTYGGYGSNMYSSYGGFGNTYGSGGLYGNSMYS 141
Query: 331 LTGQAYGTRVLGPGGDSTNYGG 396
G YG + G G YGG
Sbjct: 142 SYGGGYGGSLYGGSG---MYGG 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,649
Number of Sequences: 37544
Number of extensions: 393037
Number of successful extensions: 952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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