Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L23
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    98   7e-21
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    52   8e-07
03_01_0515 - 3864796-3865425                                           31   1.3  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   3.9  
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150...    29   5.2  
12_02_0172 - 14891923-14892102,14892894-14892980                       28   9.0  
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302...    28   9.0  
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548...    28   9.0  
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618...    28   9.0  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 18/141 (12%)
 Frame = +3

Query: 93  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 272
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 273 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH------------------EAKI 398
             QK +  LR  YK K   PLDLR KKTRA+R+ LTKH                  +  +
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120

Query: 399 KTRKEIRKKSLFPPRVYAVKA 461
           KT +E +++  FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 37/104 (35%), Positives = 50/104 (48%)
 Frame = +3

Query: 87  VKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVY 266
           V M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+   Y
Sbjct: 106 VAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALREAY 164

Query: 267 IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 398
                          K K   PLDLR KKT A+R+ LTKH+  +
Sbjct: 165 -------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +3

Query: 777 PPXXKXVXPXGPXFPXSXPXCXSXAPPXXXXXPXNPVXPSPP 902
           PP      P  P  P   P   S  PP     P +PV  SPP
Sbjct: 76  PPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPP 117


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +3

Query: 777  PPXXKXVXPXGPXFPXSXPXCXSXAPPXXXXXPXNPVXPSPP 902
            PP      P  P  P   P   S +PP     P +P   +PP
Sbjct: 1129 PPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPP 1170


>02_01_0228 +
           1507314-1507566,1507645-1507913,1508010-1508213,
           1508323-1508415,1508509-1508604,1508688-1509032,
           1509123-1509191,1509284-1509367,1509455-1509520,
           1509735-1509800,1509934-1509999,1510097-1510162,
           1510280-1510327,1510406-1510468,1510554-1510619,
           1510782-1510841,1511185-1511232,1511315-1511605
          Length = 750

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 291 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 461
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K   P + Y  +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286


>12_02_0172 - 14891923-14892102,14892894-14892980
          Length = 88

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 189 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 362
           +A +  GV  K+S       A  R    +V H+ +++  RNH  ++KY+   L  +    
Sbjct: 1   MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59

Query: 363 MRKALTK 383
            R+A TK
Sbjct: 60  SRRAKTK 66


>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
            18230710-18231949,18232085-18232419,18232500-18232577,
            18232872-18232978,18233020-18233062
          Length = 1506

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +3

Query: 183  LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 362
            L  A+    +  K    R +RKA A++     ++ K   +   + KK +  D+ AKK + 
Sbjct: 1329 LEAAEAAKRLEEKKQNEREMRKAAAKLERERLKQEKELKQKQEEQKKKRDADVAAKKRQR 1388

Query: 363  MRKALTKHEAKIKTRKEIRKKSLFP 437
              +   + + K K  +E RK+   P
Sbjct: 1389 GEEERKEKQRKRKCTEEARKQQKQP 1413


>08_02_0431 +
           17053928-17054189,17054296-17054564,17054661-17054864,
           17054974-17055066,17055160-17055255,17055339-17055683,
           17055935-17056018,17056106-17056171,17056268-17056333,
           17056436-17056501,17056635-17056700,17056798-17056863,
           17056981-17057028,17057107-17057169,17057255-17057320,
           17057483-17057542,17057888-17057935,17058019-17058255,
           17058346-17058366
          Length = 741

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 291 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 425
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279


>07_01_0794 -
           6179424-6179714,6179797-6179844,6180189-6180248,
           6180411-6180476,6180562-6180624,6180703-6180750,
           6180868-6180933,6181031-6181096,6181230-6181295,
           6181510-6181575,6181663-6181746,6181839-6181907,
           6181998-6182342,6182426-6182521,6182615-6182707,
           6182817-6183020,6183117-6183385,6183492-6183753
          Length = 753

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 291 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 425
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,062
Number of Sequences: 37544
Number of extensions: 272814
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)