Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L22
         (1046 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.73 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 921 APPPPPPP 898
           APPPPPPP
Sbjct: 730 APPPPPPP 737



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 642 PPPPPPPK 665
           PPPPPPP+
Sbjct: 731 PPPPPPPR 738



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 640 APPPPPP 660
           APPPPPP
Sbjct: 730 APPPPPP 736



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 505 PPPPPPXXKKKXXGGGXKXXKXPP 576
           PPPPPP   +          K PP
Sbjct: 731 PPPPPPPRVESFAETVRTVSKIPP 754


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +1

Query: 925  PPXXXXPPXPPPXXXXPPXXXPPXXXXPPPXXPPXPPPP 1041
            P     P    P    PP         P P  PP P PP
Sbjct: 149  PKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPP 187


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +1

Query: 925  PPXXXXPPXPPPXXXXPPXXXPPXXXXPPPXXPPXPPPP 1041
            P     P    P    PP         P P  PP P PP
Sbjct: 149  PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 945 PPPPXPXXXPP 977
           PPPP P   PP
Sbjct: 736 PPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 945 PPPPXPXXXPP 977
           PPPP P   PP
Sbjct: 628 PPPPHPHHQPP 638


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
            transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +1

Query: 952  PPPXXXXPPXXXPPXXXXPPPXXPP 1026
            PP     PP    P    P P  PP
Sbjct: 61   PPHHYGGPPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.154    0.573 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,073
Number of Sequences: 336
Number of extensions: 5166
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29898130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)