Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L22
         (1046 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.85 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.85
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 918  PPPPPPPXXG 889
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 918  PPPPPPP 898
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 642  PPPPPPP 662
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 642  PPPPPPP 662
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 271  KRVXXKXXXPPPPPP 315
            +R   +   PPPPPP
Sbjct: 1346 ERTAWRQQQPPPPPP 1360



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 915  PPPPPPXXGXG 883
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 921 APPPPPPPXXG 889
           APPPPPP   G
Sbjct: 342 APPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 640 APPPPPP 660
           APPPPPP
Sbjct: 342 APPPPPP 348



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 1006 PPPXXPPXPPP 1038
            PP   PP PPP
Sbjct: 338  PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 1009 PPXXPPXPPPP 1041
            PP   P PPPP
Sbjct: 338  PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
 Frame = +3

Query: 927  PXXXXPPPPPXPXXXPPXXX---PPXXXXPPSXXXPPXPPP 1040
            P    P P P P   P       PP     P    PP  PP
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 633  GXXPPPPPPPK 665
            G   PPPPPP+
Sbjct: 1855 GSPEPPPPPPR 1865



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 927  GXAPPPPPPP 898
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.154    0.573 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,824
Number of Sequences: 438
Number of extensions: 14221
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34824789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)