Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L17
         (955 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   2.7  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   2.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   3.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   5.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   6.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 557 GKXPPPPPP 531
           G  PPPPPP
Sbjct: 7   GNPPPPPPP 15



 Score = 22.6 bits (46), Expect(2) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 548 PPPPPPXXG 522
           PPPPPP  G
Sbjct: 9   PPPPPPPPG 17


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -3

Query: 824 PGGPXXRXGGXFGGXXGGGXGFXPRG 747
           PGGP    GG   G  GGG GF P G
Sbjct: 80  PGGPG---GGPGEGFPGGGFGFDPFG 102


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 569 VXXXGKXPPPPPP 531
           V   G  PPPPPP
Sbjct: 770 VAGAGPPPPPPPP 782



 Score = 22.6 bits (46), Expect(2) = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 554 KXPPPPPP 531
           K PPPPPP
Sbjct: 730 KSPPPPPP 737



 Score = 22.6 bits (46), Expect(2) = 3.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 548 PPPPPPXXG 522
           PPPPPP  G
Sbjct: 761 PPPPPPPPG 769



 Score = 21.8 bits (44), Expect(2) = 4.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 548 PPPPPPXXGXKXG 510
           PPPPPP      G
Sbjct: 776 PPPPPPPPAVSAG 788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 22.6 bits (46), Expect(2) = 5.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 548 PPPPPPXXGXKXGK 507
           PPPPPP      G+
Sbjct: 361 PPPPPPRSAPSTGR 374



 Score = 22.2 bits (45), Expect(2) = 5.1
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -3

Query: 611 PPKNXTXXPRGGGXVXXXGKXPPPPPP 531
           PP        G   +   G+  PPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 853 GGGXVGKXXXXGGXFXGXGGXLGGPXG 773
           GGG  G     GG   G GG  GGP G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = -2

Query: 582 GGGXGXXKXEKXXPPPPGXGXXKXEGXWGVG*XXFGXGXXGSG 454
           GGG G        PPP   G     G  G G    G G  G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 773 PXXXPQXPPXPAKXAPXXGXFSHXXPPP 856
           P   PQ  P P   AP      H  PPP
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPP 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,336
Number of Sequences: 5004
Number of extensions: 20446
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)