Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L14
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    27   2.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.6  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   3.5  

>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 447 CLCQWQXXRSCWPSPDVHRX*CCHLRVLRXWCRKP 343
           CLC+    ++    P +    CCH    R WC  P
Sbjct: 8   CLCKAIHLKAIIEEPKLS---CCHCETCRIWCSSP 39


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 187  IFKATPPXTSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFSMMTAVS 333
            + ++ PP  SR   + E+ R + L+DR   +   KP+T E  ++ T+++
Sbjct: 1137 VSQSLPPQMSRVVHDTEK-RLNMLFDRLNSNVLSKPLTDELLALATSLN 1184


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 259 WDRTTMDYSVKP 294
           WDRTT+DY ++P
Sbjct: 14  WDRTTIDYDIEP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,127
Number of Sequences: 5004
Number of extensions: 55678
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)