Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L14
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    26   2.3  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 25.8 bits (54), Expect(2) = 2.3
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +3

Query: 615 HXPPHSXXHVCXVFPPKXAYYSXFXXIFSPLPTXNPGYFXDSXLSXHVHYY 767
           H   H   H C  FPP   ++  F   + P P   P ++       H H++
Sbjct: 413 HGHHHHHHHGCRPFPPHHGHH-HFPPFWPPCPPP-PPFWPPHRRGGHCHHH 461



 Score = 22.6 bits (46), Expect(2) = 2.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 591 PGXSGDCHHXPPHSXXH 641
           PG  G  HH PPH   H
Sbjct: 391 PGRHG--HHGPPHHHHH 405


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +3

Query: 234 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGQLTGQAYGTXVLGPGG 377
           GGG   G  G   DG +G  G+         G + G  YG   +G GG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG 214


>Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical
           protein H03G16.6 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 306 LCCNRLYRIVHRRSVPKCRRPSLLPFSCPT 217
           LC N  Y++      PK R+ +L+P S PT
Sbjct: 86  LCTNMSYQLQKMVVFPKVRKEALMPTSSPT 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,436
Number of Sequences: 27780
Number of extensions: 334264
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)