Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L13
         (1075 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.66 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.66
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 1013 PPXPXPPPPP 1042
            PP P PPPPP
Sbjct: 338  PPKPAPPPPP 347



 Score = 25.4 bits (53), Expect = 0.88
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 906 PPPPXPPPXPP 938
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 781 GXXRPPPXPXPXPPP 825
           G    PP P P PPP
Sbjct: 333 GDSDTPPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 1010 PPPXPXPPPP 1039
            P P P PPPP
Sbjct: 339  PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 912 PPXPPPXPPXP 944
           PP P P PP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 1010 PPPXPXPPPPP 1042
            PP    PPPPP
Sbjct: 338  PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 894  KXKXPPPPXPPP 929
            + + PPPP PPP
Sbjct: 1351 RQQQPPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 473  PPPPPPXXG 499
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 906 PPPPXPPPXPPXPXP 950
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,313
Number of Sequences: 438
Number of extensions: 10794
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35909298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)