Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_L12
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 70 5e-13
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 69 1e-12
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.18
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.31
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.9
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 8.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 8.8
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 8.8
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 69.7 bits (163), Expect = 5e-13
Identities = 29/52 (55%), Positives = 36/52 (69%)
Frame = +3
Query: 129 NCRCSLKKKRAKSRVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIR 284
N + K+ K P+ +D+VKT KELAPYDPDW+YVR AAI RHIY+R
Sbjct: 16 NAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLR 67
Score = 29.5 bits (63), Expect = 0.72
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 91 VTVKDVEQDKIVKTVAAHLKKNGQSQGYLSTWIL*RQLASKSWLRMTLIGSMCVVLPSFV 270
V+VKDV+ + + AA LK++G+ WI + + L V +
Sbjct: 4 VSVKDVDAQQFINAYAAFLKRSGKMT--TPQWIDIVKTGTHKELAPYDPDWYYVRAAAIA 61
Query: 271 IFTFAHL-VGVKTVTKIFGGRXRNGVTPSH 357
+ VGV + K++GG G+ PSH
Sbjct: 62 RHIYLRKQVGVGRLCKVYGGSVNRGMRPSH 91
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 68.5 bits (160), Expect = 1e-12
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +3
Query: 150 KKRAKSRVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIR 284
K+ K P+ +D+VKT KELAPYDPDW+YVR AAI RHIY+R
Sbjct: 23 KRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLR 67
Score = 30.7 bits (66), Expect = 0.31
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +1
Query: 91 VTVKDVEQDKIVKTVAAHLKKNGQSQGYLSTWIL*RQLASKSWLRMTLIGSMCVVLPSFV 270
V+VKDV+ K + AA LK++G+ WI + + L V +
Sbjct: 4 VSVKDVDAQKFITAYAAFLKRSGKMT--TPQWIDIVKTGTHKELAPYDPDWYYVRAAAIA 61
Query: 271 IFTFAHL-VGVKTVTKIFGGRXRNGVTPSH 357
+ VGV + K++GG G+ PSH
Sbjct: 62 RHIYLRKQVGVGRLCKVYGGSVNRGMRPSH 91
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.18
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +1
Query: 739 PXHX*TPPPLXPXSQXPXXXITXNXXPXXXTPPXPPXPNTXRGRPXPAPIPXXP 900
P H + PP+ P S P P + P PP P AP P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 783 GXPPXHHXQXRPQXXHSXXAPXSKHXTRPPXPCSYPXXTPXTSPXP 920
G P H P S P T PP P S P P P P
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVP-PPPSAPPMP 1724
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Frame = +2
Query: 662 PXXPXXPPPP---APXXPLXXXXXXXXXXXXTXKPXPPSXPXPRXPXXTSPPXPXP 820
P P PP AP P PPS P P P ++P P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.31
Identities = 28/114 (24%), Positives = 31/114 (27%), Gaps = 7/114 (6%)
Frame = +1
Query: 580 QNXSXXPPHPPXX-------PPPXXSXXXXXXXXXXXXXXXPAXRPPXPPXXGXGPTXAX 738
Q S PP PP PPP S P PP T
Sbjct: 356 QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415
Query: 739 PXHX*TPPPLXPXSQXPXXXITXNXXPXXXTPPXPPXPNTXRGRPXPAPIPXXP 900
P TPP L P + P P P+ P PA +P P
Sbjct: 416 PVP--TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP 467
Score = 30.3 bits (65), Expect = 0.41
Identities = 28/108 (25%), Positives = 32/108 (29%), Gaps = 9/108 (8%)
Frame = +1
Query: 589 SXXPPHPPXXPPPXX----SXXXXXXXXXXXXXXXPAX----RPPXPPXXGXGPTXAXPX 744
S P PP PPP S PA +PP PP A
Sbjct: 247 SLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAA 306
Query: 745 HX*TPPPLXPXSQXPXXXITX-NXXPXXXTPPXPPXPNTXRGRPXPAP 885
+ PPP P S+ N PP PP P + P P
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354
Score = 26.2 bits (55), Expect = 6.7
Identities = 22/90 (24%), Positives = 23/90 (25%)
Frame = +1
Query: 610 PXXPPPXXSXXXXXXXXXXXXXXXPAXRPPXPPXXGXGPTXAXPXHX*TPPPLXPXSQXP 789
P PPP S P PP G P + PPP P
Sbjct: 290 PPLPPP--SSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 790 XXXITXNXXPXXXTPPXPPXPNTXRGRPXP 879
I PP PP GR P
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
Score = 26.2 bits (55), Expect = 6.7
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +1
Query: 682 PAXRPPXPPXXGXGPTXAXPXHX*TPPPLXPXSQXPXXXITXNXXPXXXTPPXPPXPNTX 861
P+ P PP + P PPL P + P P PP PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA--PIAPPLPAGMPA--APPLPPA--AP 474
Query: 862 RGRPXPAPIPXXP 900
P PAP P P
Sbjct: 475 APPPAPAPAPAAP 487
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Frame = +1
Query: 694 PPXP-PXXGXGPTXAXPXHX*TPPPLXPXSQXPXXXITXNXXPXXXTPPX-PPXPNTXRG 867
PP P P G P P PP+ P S+ P P P PP P G
Sbjct: 1169 PPVPAPSSGIPPV---PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
Query: 868 RPXPAPIP 891
P P P+P
Sbjct: 1226 LP-PVPVP 1232
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 757 PPPLXPXSQXPXXXITXNXXPXXXTPPXPPXPNTXRGRP-XPAPIP 891
PP P + P + P PP P + G P P P+P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +1
Query: 757 PPPLXPXSQXPXXXITXNXXPXXXTPPXPPXPNTXRGRPXPAPIPXXP 900
PP + + P P PP PP P G P P P P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 835 PXPPXPNTXRGRPXPAPIPXXP 900
P PP P P PAPIP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP 753
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 684 RXPPPXXPSXRXGXHXRXPXPHXNPXPPXXPLPGXPP 794
+ PPP P+ P P P PP P+ G PP
Sbjct: 730 KSPPPPPPA----VIVPTPAPAPIPVPPPAPIMGGPP 762
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -1
Query: 318 DLGDSLDSNQVSECKYDEGWQHNAHRTNQGHTEP 217
+ GDS + +++ +C+ +GW H A + ++P
Sbjct: 338 ECGDSTEDSEMFQCERCDGWVHCACYGFESDSDP 371
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/81 (24%), Positives = 23/81 (28%)
Frame = +3
Query: 693 PPXXPSXRXGXHXRXPXPHXNPXPPXXPLPGXPPXHHXQXRPQXXHSXXAPXSKHXTRPP 872
PP + G H P H P P PP HH +H PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPP----PPMHHEPGEHMPPPPMHHEPGEH--MPP 261
Query: 873 XPCSYPXXTPXTSPXPXHTXP 935
P + P P H P
Sbjct: 262 PPMHHEPG-EHMPPPPMHHEP 281
Score = 25.8 bits (54), Expect = 8.8
Identities = 22/93 (23%), Positives = 24/93 (25%)
Frame = +3
Query: 657 PXPXTXXXPRXPPPXXPSXRXGXHXRXPXPHXNPXPPXXPLPGXPPXHHXQXRPQXXHSX 836
P P PP G H P H P P PP HH
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP----PPMHHEPGEHMPPPPM 264
Query: 837 XAPXSKHXTRPPXPCSYPXXTPXTSPXPXHTXP 935
+H PP P + P P H P
Sbjct: 265 HHEPGEH--MPPPPMHHEPG-EHMPPPPMHHEP 294
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 88 PVTVKDVEQDKIVKTVAAHLKKNGQSQ 168
P +D E DKI ++V HL K +SQ
Sbjct: 81 PYDHEDEEADKIYQSVEEHLSKRRKSQ 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,188
Number of Sequences: 5004
Number of extensions: 40847
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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