Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L11
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.27 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 743  PPPXXXPPPPXXPPXTTPPXXP 808
            PPP   PP P  PP   PP  P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +2

Query: 743  PPPXXXPPPPXXPPXTT-PPXXP 808
            PPP   PPPP  PP    PP  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAP 1731


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/63 (28%), Positives = 19/63 (30%)
 Frame = +2

Query: 602 PXRPPPXLXXGGXAPPQXXXXXXXVXXXPPPPXSXXXXXXXFXXXXXPPPXXXPPPPXXP 781
           P  PPP     G  P         +   PPPP S               P   PPPP   
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP--PPPPPRSA 369

Query: 782 PXT 790
           P T
Sbjct: 370 PST 372



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/79 (24%), Positives = 20/79 (25%), Gaps = 2/79 (2%)
 Frame = +2

Query: 578 PPXXXXXXPXRPPPXLXXGGXAPPQXXXXXXXVXXXPPPPXSXXXXXXXFXXXXXPPPXX 757
           PP      P  PP      G  PP             PPP                    
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413

Query: 758 XPPPPXXP--PXTTPPXXP 808
            PP P  P  P + PP  P
Sbjct: 414 TPPVPTPPSLPPSAPPSLP 432


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
 Frame = +2

Query: 566 PXXPPPXXXXXXPXR-----PPPXLXXGGXAPPQXXXXXXXVXXXPPPP 697
           P  PPP      P       PPP    GG  PP            PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +1

Query: 685 PPPPXLXXXXXXXFXXXXXPPXXXLSXPPXPXPP 786
           PPPP +             PP   +  PP P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
 Frame = +2

Query: 686 PPPPXSXXXXXXXFXXXXXPPPXXX---PPPPXXPPXTT---PPXXP 808
           PPPP +             PPP      PPPP  PP      PP  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 749 PXXXPPPPXXPPXTTPPXXP 808
           P   PPPP  PP   PP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQP 24



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 746 PPXXXPPPPXXPPXTTPPXXP 808
           PP   PPP   PP   PP  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
 Frame = +2

Query: 743 PPPXXXPP---PPXXPPXTTPP 799
           PPP   PP   PP  PP   PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,840
Number of Sequences: 5004
Number of extensions: 26280
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)