Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_L09
(959 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 7e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.011
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.18
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 9.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 9.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.5 bits (88), Expect = 7e-04
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +2
Query: 488 PXXSLLKXXPPPPPXXXXXXXXPPPPPPPXNTXXXRGXAPXGPXXXXHPPP 640
P ++ PPPPP PPPPPPP G P P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 488 PXXSLLKXXPPPPPXXXXXXXXPPPPPPP 574
P + + PPPPP PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.5 bits (68), Expect = 0.18
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Frame = +2
Query: 500 LLKXXPPPPPXXXXXXXXPPP---PPP------PXNTXXXRGXAPXGPXXXXHPPP 640
LLK PPPPP P P PPP P G A GP PPP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Frame = +2
Query: 500 LLKXXPPPPPXXXXXXXXPP-----PPPPPXNTXXXRGXAPXGPXXXXHPPP 640
LL PPPPP P PPP P P G PPP
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 515 PPPPPXXXXXXXXPPPPPPPXNTXXXRGXAP 607
PPPPP PPPPPPP + P
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 31.5 bits (68), Expect = 0.18
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 515 PPPPPXXXXXXXXPPPPPPP 574
PPPPP PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.026
Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Frame = +2
Query: 506 KXXPPPPPXXXXXXXXPP----------PPPPPXNTXXXRGXAPXGPXXXXHPPPXXGXX 655
K PPPPP PP PPPPP G P P PPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 656 XXXPXTRAXXL-KKKTXSXPPAXAXXXP 736
+ L + S PPA P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 29.1 bits (62), Expect = 0.97
Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Frame = +2
Query: 554 PPPPPPPXNTXXXRGXAPXG---PXXXXHPPPXXGXXXXXPXTRAXXLKKKTXSXPPAXA 724
PPPPPPP + RG P G PPP + PP +
Sbjct: 311 PPPPPPP--SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 725 XXXPQXLXXPXXSXXXXXXPXRPPP 799
P S P PPP
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/77 (25%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Frame = +1
Query: 517 PPPAXXXXXXXXPPPPPPPXKHXXTPGXXXRG-AAXXXPPXXXXXXXXXPXQXPRXXPQK 693
PPP PP PPP P G A+ P P P P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435
Query: 694 KNXLXPPXXXXXXPPXP 744
L P PP P
Sbjct: 436 PPSL--PMGAPAAPPLP 450
Score = 25.8 bits (54), Expect = 9.1
Identities = 19/83 (22%), Positives = 20/83 (24%), Gaps = 3/83 (3%)
Frame = +1
Query: 514 PPPPAXXXXXXXXPPPPPPPXKHXXTPGXXXRGAAXXXPPXXXXXXXXXPXQXPRXXPQK 693
PPPP P PP P PP P P P +
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Query: 694 KNXLXPP---XXXXXXPPXPLXP 753
PP PP P P
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPP 421
Score = 25.8 bits (54), Expect = 9.1
Identities = 25/115 (21%), Positives = 26/115 (22%), Gaps = 5/115 (4%)
Frame = +2
Query: 467 PPXGGXXPXXSLLKXXP-----PPPPXXXXXXXXPPPPPPPXNTXXXRGXAPXGPXXXXH 631
PP G P + P PPP PP PPP P G
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413
Query: 632 PPPXXGXXXXXPXTRAXXLKKKTXSXPPAXAXXXPQXLXXPXXSXXXXXXPXRPP 796
PP P S P P P P PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.18
Identities = 26/113 (23%), Positives = 34/113 (30%)
Frame = +2
Query: 470 PXGGXXPXXSLLKXXPPPPPXXXXXXXXPPPPPPPXNTXXXRGXAPXGPXXXXHPPPXXG 649
P P + PP P PPP P P ++ AP G P P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP-SSEIPSIPAPSGAPPV--PAPSGI 1091
Query: 650 XXXXXPXTRAXXLKKKTXSXPPAXAXXXPQXLXXPXXSXXXXXXPXRPPPXQK 808
P A + K + + PP A + P + P PP K
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 502 PKKXPPPPAXXXXXXXXPPPPPPPXKHXXTPGXXXRG 612
P PPPP+ P PPPP P G
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/55 (25%), Positives = 16/55 (29%)
Frame = +2
Query: 476 GGXXPXXSLLKXXPPPPPXXXXXXXXPPPPPPPXNTXXXRGXAPXGPXXXXHPPP 640
GG P + P P PPPPP + P PPP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.9
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Frame = -3
Query: 639 GGGWXXXXGPXGAXPRXXXVFXGGGGGGGXXXXXXXXGG---GGGXF 508
GGG+ G G P F G GG GG GG G G F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 554 PPPPPPPXN 580
PPPPPPP N
Sbjct: 308 PPPPPPPSN 316
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = +1
Query: 502 PKKXPPPPAXXXXXXXXPPPPPPPXKHXXTP 594
P+ P PP PPPPP + +P
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPPVRSSISP 755
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,935
Number of Sequences: 5004
Number of extensions: 16530
Number of successful extensions: 317
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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