Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L06
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.071
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.87 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    28   1.5  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    26   6.1  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   6.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = -2

Query: 600 SQRPMSCRCAXTR*SPARWPRSTPQRSS--DRSASSIAPLGSSVLKLPMNATPMDLELYP 427
           S  P S     T  S  R P S P R S    S +S  P+ S    +P +  P      P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180

Query: 426 *VCAPTCSQPEPSYTLPLPPTRNEGPMSQ 340
            V +P  +   PS   P+PP     P+SQ
Sbjct: 181 -VKSPPSAPSLPSAVPPMPPKVPPPPLSQ 208


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 531 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 373
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
 Frame = -2

Query: 591 PMSCRCAXTR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLE 436
           P  CR A T   P      T Q        S+ R A++     + + ++P  N  P D +
Sbjct: 529 PCPCRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD 588

Query: 435 LYP*VCAPTCSQPEPSY 385
               VC P C+ P P+Y
Sbjct: 589 ----VCPPACNTPPPNY 601


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -2

Query: 249 WTMTRLTGRARYDTCTGIKPSHCFL--LTTSQSAAISVRSELRASASTTAEWRRAMSRSG 76
           + +  L GR  ++ C  +         ++TS ++++SV        +  +EW  +M+ S 
Sbjct: 344 FALDELDGRIIHNCCLQVAYYDAMADSVSTSSASSLSVPRGFSGMLNNNSEWNNSMTMSS 403

Query: 75  ACQHVSTRACAKS 37
             +  +  +CA S
Sbjct: 404 NQETPTAASCAVS 416


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 366 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 277
           T+   P   Y     WLVW     +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,622
Number of Sequences: 5004
Number of extensions: 58239
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)