Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_L01
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.030
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.84 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 22/102 (21%), Positives = 24/102 (23%)
 Frame = +1

Query: 532 PPXEAXGXPPXGXXXPXXXFXPPPPXXXLPXXGXFXXXPPPXNXPPPPXXPQKXGXXXXX 711
           P     G PP G         PPPP       G     P   + PPPP            
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376

Query: 712 XXXXXXXXXXXXXPPPPRGGXKKXXPXPPXXXXXNXXXPXXP 837
                         PPP    +     PP         P  P
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/82 (23%), Positives = 21/82 (25%)
 Frame = +1

Query: 595 PPPPXXXLPXXGXFXXXPPPXNXPPPPXXPQKXGXXXXXXXXXXXXXXXXXXPPPPRGGX 774
           PPPP                 + PPPP  P+                     PPPPR   
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP---PPPPRSAP 370

Query: 775 KKXXPXPPXXXXXNXXXPXXPP 840
                 PP         P  PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPP 392


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 26/84 (30%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
 Frame = -2

Query: 683 GXXGGG-GXFXGGGXXXKXPXXGXXCXGG-GGXKXXXGXXXPXGGXPXASXGGXXPW--X 516
           G  GGG G F GG         G    GG GG     G     GG P    GG   +   
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243

Query: 515 XXXXXXXXNXXGGXPGGXXFLXGG 444
                      GG PGG     GG
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = -3

Query: 847 GXXGGGXXXXXXGXXXXGGG-GXFFXPPXGGGGXG 746
           G  GGG      G    GGG G F   P G GG G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 535 PXEAXGXPPXGXXXPXXXFXPPPPXXXLPXXGXFXXXPPPXNXPPP 672
           P  A    P     P     PPPP    P  G     PPP   PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPP----PPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,682
Number of Sequences: 5004
Number of extensions: 34556
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)