Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_K24
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.70
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 791 SPTPXPXFXXFLNPXVAPVPXXXPSP--RAPPXPXXPP 898
SP P P P AP+P P+P PP P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 29.1 bits (62), Expect = 0.92
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Frame = +1
Query: 517 PPPGAXIFRXAPXXXFXPPXL*-----NPXPPXPG--GXXPPPXGPP 636
PPP + AP PP P PP PG G PPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/52 (26%), Positives = 17/52 (32%)
Frame = +2
Query: 743 SPLXXKPGPXFXXPXXSPTPXPXFXXFLNPXVAPVPXXXPSPRAPPXPXXPP 898
SP P P +P P P + P P + PP P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/53 (28%), Positives = 17/53 (32%)
Frame = +2
Query: 713 PPXXPPEKNXSPLXXKPGPXFXXPXXSPTPXPXFXXFLNPXVAPVPXXXPSPR 871
PP P P PG P P P P + AP P P P+
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.70
Identities = 22/78 (28%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = +2
Query: 668 PXXGKXSXQKKXXXP-PPXXPPEKNXSPLXXKPGPXFXXPXXSPTPXPXFXXFLNPXVAP 844
P G S P PP PP S L P + P P P A
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPS-LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462
Query: 845 VPXXXPSPRAPPXPXXPP 898
+P P P A P P P
Sbjct: 463 MPAAPPLPPAAPAPPPAP 480
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/70 (35%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = -2
Query: 635 GGPXGG-GXXPPGXGG-XGFQXXGGKXXXXGAXRKXLAPGGGFXRFXKXPKXKXVSGGAL 462
GG GG G PPG GG GF GG+ G GGG F P G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF---GGGPGGFEGGPGGFGGGPGGF 247
Query: 461 EGXNPXXGGG 432
G GGG
Sbjct: 248 GGGLGGFGGG 257
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Frame = +1
Query: 568 PPXL*NPXPPXPG-GXXPPPXGPPXXXXFXXLXXPP 672
PP + P PP P PPP PP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 547 APXXXFXPPXL*NPXPPXPGGXXPPPXGPP 636
+P F PP P P PPP PP
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPP 195
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/63 (26%), Positives = 20/63 (31%)
Frame = +2
Query: 710 PPPXXPPEKNXSPLXXKPGPXFXXPXXSPTPXPXFXXFLNPXVAPVPXXXPSPRAPPXPX 889
P P P + P P P P SP P + P+P P P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPP--SPASAPP----IPSKAPPIPSSLPPPAQPAAPV 181
Query: 890 XPP 898
P
Sbjct: 182 KSP 184
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 806 PXFXXFLNPXVAPVPXXXPSPRAPPXPXXPP 898
P F NP + P+P +P A P P PP
Sbjct: 158 PGFGNLPNPAMPPIPFLPFNPAAQP-PFPPP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,405
Number of Sequences: 5004
Number of extensions: 37983
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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