Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K23
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    30   0.38 
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   4.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   4.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   4.7  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    26   6.2  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.2  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    26   8.2  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 469 SALSNS-HLRPNGRLRSSACIRXSTRAPVPSALNGASP 579
           SALS+S HL+P     SS+ +  S  AP P A + +SP
Sbjct: 231 SALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 426 DTNCPAYDIIHCALISFIKFASPSQW 503
           +TNC  Y +I+ A   + +F SP+ W
Sbjct: 267 ETNCLYYAVIYLAPGDYHRFHSPTDW 292


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 313 LLVYNVVLSPAGFLEDTSRFVALGNRFVTFFRY 215
           L V + +LSP G  ++TS F+ LGN  ++F  Y
Sbjct: 19  LFVDDQLLSPIGDSKNTSSFIYLGNP-ISFHEY 50


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 502  HWDGDANLIKLIRAQCIMSYAGQFVSTPLR 413
            HW    +L+   +  CI  +AGQ +STP R
Sbjct: 1163 HWYSLMSLMGTSQGICIPRHAGQVLSTPRR 1192


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 254 KTRCIFKESGWAKNNVIDKKKVSDYFE 334
           KT  IFK++G+A  NV+D    S  F+
Sbjct: 176 KTSPIFKKNGYATENVVDPISSSPRFK 202


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 266 IFKESGWAKNNVIDKKKVSDYFEQFAKDNP 355
           IF+E G   +N+ D     DY    + DNP
Sbjct: 13  IFEEKGSTSSNISDNCASRDYDVNISSDNP 42


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 624 GPGRGTRYTNHSVLMGXSTVQGRRXRRPRTA 532
           G GRG  +  HSV+    +  GR   R   A
Sbjct: 412 GQGRGQEFAKHSVISSTLSTTGRSAERKNIA 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,079
Number of Sequences: 5004
Number of extensions: 64472
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)