Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K23
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    29   3.4  
L23648-10|AAK95878.2|  368|Caenorhabditis elegans Hypothetical p...    29   3.4  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        29   3.4  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.4  
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.8  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
 Frame = +3

Query: 513 EQCVYPXQYA--GACX-VCPERCFXPSVP--NGSCNA 608
           ++CV P ++A   +C  +CPE C  PSVP  +G+C+A
Sbjct: 778 QRCVCPDKHAVWSSCGTLCPEYCGQPSVPVCSGTCSA 814


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
 Frame = +3

Query: 513 EQCVYPXQYA--GACX-VCPERCFXPSVP--NGSCNA 608
           ++CV P ++A   +C  +CPE C  PSVP  +G+C+A
Sbjct: 569 QRCVCPDKHAVWSSCGTLCPEYCGQPSVPVCSGTCSA 605


>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
            T04A8.14 protein.
          Length = 1521

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 146  VYCGELPNTIYSCLGNPKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSD 325
            V C   P    +C G  KI   +VSEK +  +   D +R   +   WA+   +D  +V D
Sbjct: 988  VGCKLGPKVFMNCAGFIKIDTIKVSEKTDAYVEVLDGSRVHPETYEWARKMAVDALEVDD 1047


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
            protein T04A8.14 protein.
          Length = 1521

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 146  VYCGELPNTIYSCLGNPKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSD 325
            V C   P    +C G  KI   +VSEK +  +   D +R   +   WA+   +D  +V D
Sbjct: 988  VGCKLGPKVFMNCAGFIKIDTIKVSEKTDAYVEVLDGSRVHPETYEWARKMAVDALEVDD 1047


>L23648-10|AAK95878.2|  368|Caenorhabditis elegans Hypothetical
           protein F44B9.8 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 167 NTIYSCLG--NPKIIQPEVSEKCNKPISECDKT-RCIFKESGWAKNNVI 304
           NT+Y C+G   PK ++  V    N P  +C  T +    E+G+A  +VI
Sbjct: 251 NTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVI 299


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 146  VYCGELPNTIYSCLGNPKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSD 325
            V C   P    +C G  KI   +VSEK +  +   D +R   +   WA+   +D  +V D
Sbjct: 988  VGCKLGPKVFMNCAGFIKIDTIKVSEKTDAYVEVLDGSRVHPETYEWARKMAVDALEVDD 1047


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 762 PPXXXXXXPXPXXPPXXXXVXXPPPXXKXPSXXXXXXPPP 881
           PP      P P  PP       PPP    P       PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 762 PPXXXXXXPXPXXPPXXXXVXXPPPXXKXPSXXXXXXPPP 881
           PP      P P  PP       PPP    P       PPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 762 PPXXXXXXPXPXXPPXXXXVXXPPPXXKXPSXXXXXXPPP 881
           PP      P P  PP       PPP    P       PPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 329


>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 361
           + I++ D  R     + W K N  D+     YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820


>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 361
           + I++ D  R     + W K N  D+     YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820


>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 361
           + I++ D  R     + W K N  D+     YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820


>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 233 KPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDW 361
           + I++ D  R     + W K N  D+     YF+ F + NPDW
Sbjct: 784 RTIADYDNNRLAVVGTQW-KENFFDQ-----YFDNFTRQNPDW 820


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +3

Query: 738 PXPXXXXXPPXXXXXXPXPXXPPXXXXVXXPPPXXKXPSXXXXXXPPP 881
           P P     PP      P P           PPP  + PS      PPP
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +3

Query: 738 PXPXXXXXPPXXXXXXPXPXXPPXXXXVXXPPPXXKXPSXXXXXXPPP 881
           P P     PP      P P           PPP  + PS      PPP
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 299 VIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGR*YELSCVRHYTLCSDQLY 478
           V+  K V D      +D   W+  V   KTTCL  S+  + +      V H    S  LY
Sbjct: 531 VMSLKVVKDSINMVHRDIHLWNVLVSRTKTTCLDYSMDGKVKLNSYGVVMHLIDFSKSLY 590


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,615
Number of Sequences: 27780
Number of extensions: 408712
Number of successful extensions: 1346
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)