Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_K22
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0663 - 30991390-30992340 44 1e-04
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 42 8e-04
05_07_0134 - 27911920-27912762 36 0.032
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 34 0.17
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 33 0.30
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 31 1.6
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 3.7
01_01_0054 + 411675-411911,412097-412213,412401-412439,412703-41... 29 6.4
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 8.5
>01_06_0663 - 30991390-30992340
Length = 316
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/76 (34%), Positives = 34/76 (44%)
Frame = +2
Query: 416 GVVAHAKKGSLLIDSSTIDXNVPQQIFPIALEKGLGFTDAPVSGRVMGCSKRYLAFMAGX 595
G +A G LL+D +T D + +I A K DAPVSG G L+ AG
Sbjct: 99 GALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAKSCAAVDAPVSGGDRGARSATLSIFAGG 158
Query: 596 RKKNFERSLPLLQVMG 643
R PL ++MG
Sbjct: 159 DAAVVARLAPLFKLMG 174
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = +1
Query: 127 STQCLYTAARRA----YSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDAL 288
++Q +Y A++ A + T K + F+GLG MG MA++L+K GF+V YD K L
Sbjct: 302 ASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTL 359
>05_07_0134 - 27911920-27912762
Length = 280
Score = 36.3 bits (80), Expect = 0.032
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 416 GVVAHAKKGSLLIDSSTIDXNVPQQIFPIALEKGLGFTDAPVSGRVMGCSKRYLAFMAGX 595
GV+A + G +L+D ++ ++ +++ A G D+PVSG +G LA +AG
Sbjct: 66 GVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGARDGALALLAGG 125
Query: 596 RKKNFERSLPLLQVMG 643
+ PL +G
Sbjct: 126 DEAVVSWLAPLFAHLG 141
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 187 VAFLGLGNMGGFMAANLVKKGFTV 258
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 509 EKGLGFTDAPVSGRVMGCSKRYLAFMAGXRKKNFERSLPLLQVMGANS 652
+KG F +APVSG L +A K ++ +P V+G S
Sbjct: 110 QKGGAFVEAPVSGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKS 157
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 33.1 bits (72), Expect = 0.30
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Frame = +2
Query: 407 GKDGVVAHAK-KGS-LLIDSSTIDXN----VPQQIFPIALEKGLGFT------DAPVSGR 550
G++G++A+ G L IDSST+D + I L++ + DAPVSG
Sbjct: 62 GRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLDAPVSGG 121
Query: 551 VMGCSKRYLAFMAGXRKKNFERSLPLLQVMGANSXTADRSGSXXV 685
V L FM G ++ + + PLL MG + +G+ V
Sbjct: 122 VPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSV 166
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Frame = +1
Query: 46 SLLCARAHGRTLN*E-KTNSKWPRAQY*STQCLYTAARRAYSSNTDKNVAFLGLGNMGGF 222
SLLCARA + + R + C +++ + V FLGLG MG
Sbjct: 8 SLLCARAAAAAPTLRLRGGGRGARLVF---SCSASSSSPSGEGGFSGKVGFLGLGIMGAP 64
Query: 223 MAANLVKKGFTVRGYDPSKD----ALNAAAKNGVTPAN 324
MA+NL+ G V ++ ++ L+ AK +PA+
Sbjct: 65 MASNLINAGCDVTVWNRTRSKCDPLLSLGAKYEPSPAD 102
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 223 MAANLVKKGFTVRGYDPSKDALN 291
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>01_01_0054 +
411675-411911,412097-412213,412401-412439,412703-412839,
413322-413670,413815-414495
Length = 519
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 66 TRPHAKLRKNKFKMAARTILKHSVFVHSRQTGV 164
T+ H +LRKN K L VF+H R +
Sbjct: 298 TKLHDELRKNTIKALCNADLSEGVFIHGRDVSL 330
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 187 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 315
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,680,771
Number of Sequences: 37544
Number of extensions: 528015
Number of successful extensions: 1304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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