Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K21
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   105   1e-23
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   3.7  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   3.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   3.7  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    26   8.6  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  105 bits (251), Expect = 1e-23
 Identities = 46/68 (67%), Positives = 58/68 (85%)
 Frame = +3

Query: 135 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 314
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 315 SKGVRNVP 338
            +G+RNVP
Sbjct: 66  KRGIRNVP 73


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -3

Query: 283 RMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 104
           R+  +P+ F    R+    +G   L PT   R+ K   Y    TS M  L  +S LGL +
Sbjct: 45  RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 308 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 186
           E V  S+Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 29  EFLKILILDSSFLKLNSGTRNLKITNG 109
           +FL    L S+  KLN+ + NLKI NG
Sbjct: 368 QFLSSKNLTSTLFKLNADSSNLKIGNG 394


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 294 RLNKFLWSKGVRNVPSVXV*GFHEDVMMMKIPHISY 401
           +L  F WS     +PS  +  + +D  + KIP+I Y
Sbjct: 132 KLTAFAWSVYDGRLPSSELSSYQKDRALRKIPNILY 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,032
Number of Sequences: 5004
Number of extensions: 47825
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)