Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K21
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...   120   2e-27
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    48   1e-05
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    28   8.2  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    28   8.2  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score =  120 bits (288), Expect = 2e-27
 Identities = 51/75 (68%), Positives = 65/75 (86%)
 Frame = +3

Query: 114 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDT 293
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62

Query: 294 RLNKFLWSKGVRNVP 338
           +LNKF+WSKG++NVP
Sbjct: 63  KLNKFIWSKGIKNVP 77



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +2

Query: 371 NDDEDSAHKLFTLVTYVPVASIRGLQTENVDAQ 469
           N+DEDSA KL+TL TYVP  +  GL   NVD++
Sbjct: 89  NEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSE 121


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 18/25 (72%), Positives = 23/25 (92%)
 Frame = +3

Query: 264 MGTPDIRVDTRLNKFLWSKGVRNVP 338
           M T D+RVDT+LNKF+WSKG++NVP
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVP 25



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +2

Query: 371 NDDEDSAHKLFTLVTYVPVASIRGLQTENVDAQ 469
           N+DEDSA KL+TL TYVP  +  GL   NVD++
Sbjct: 37  NEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSE 69


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 392  HKLFTLVTYVPVASIRGLQTENVDAQPKNK 481
            H LFTL  ++P+A +R +    +D + K++
Sbjct: 1474 HSLFTLKQFLPLAEVRDIDYSAIDMRAKDE 1503


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 392  HKLFTLVTYVPVASIRGLQTENVDAQPKNK 481
            H LFTL  ++P+A +R +    +D + K++
Sbjct: 1472 HSLFTLKQFLPLAEVRDIDYSAIDMRAKDE 1501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,137
Number of Sequences: 27780
Number of extensions: 308127
Number of successful extensions: 1489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)