Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K20
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       41   0.001
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    40   0.002
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974...    30   2.6  
02_04_0379 - 22491069-22491503                                         29   4.5  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 184 KNITMRGNVPKTTKEKEDQYPVAPWLLG 267
           KNIT RG+VP+TT +K + YPV P +LG
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPMVLG 44


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 184 KNITMRGNVPKTTKEKEDQYPVAPWLLG 267
           KNIT RG+VP+TT +K + YPV P +LG
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGPLVLG 44


>05_03_0318 -
           12292969-12293222,12293305-12293898,12297102-12297415,
           12297712-12297893,12297960-12298187,12298234-12298698,
           12299393-12299443
          Length = 695

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 298 CVPDNPINKTSLNHEDNWRTAIENTIK*QHYPSKV-RHNLHQHLFVDMRE 444
           CV     +  S+   D W+T + N  + + Y S + RH+L Q  F+++ E
Sbjct: 206 CVEGKAKDARSITSGDGWKTRVLNRKEVRSYTSDLKRHDLRQQDFLNLEE 255


>02_04_0379 - 22491069-22491503
          Length = 144

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 297 AEPHTTKMKRAKEPGCHRILVFFFLGSFG 211
           A+ H T+ +R K  G H +   F+L  FG
Sbjct: 112 ADAHLTRERRGKRDGTHNLARLFWLAKFG 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,118,925
Number of Sequences: 37544
Number of extensions: 374705
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)