Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K18
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706...    31   1.6  
08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438...    30   2.1  
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    29   3.7  
09_04_0734 + 19796297-19796329,19796866-19797129                       29   6.5  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   6.5  
06_03_1506 + 30641428-30642168                                         29   6.5  
07_03_0332 + 16880184-16881017,16881334-16881462,16882685-168827...    28   8.6  

>07_03_0636 +
           20168180-20168462,20168961-20170303,20170401-20170678,
           20170790-20170821,20170908-20171314,20171401-20171847
          Length = 929

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 143 SFYASWLRREVSDHQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 277
           SF  S+L +E++  +       +PS Y+R   LG GNGG + + D
Sbjct: 708 SFARSYLVQELNIAETRLVPLNSPSDYARALELGSGNGGVDAIID 752


>08_02_0725 -
           20442988-20443180,20443268-20443540,20443642-20443853,
           20443935-20444247,20444334-20444441,20444537-20444643,
           20444743-20444781
          Length = 414

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 317 TTFTKKSLVALSQSPEDLPSPHFPVPSDKVV 225
           TTF +++  A S +PE+LP P   +  D+VV
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVV 263


>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 276 TLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGXLDWANE 440
           T  +   G+ G GG+    +    G  +G  YGT   G GG     GG    A+E
Sbjct: 106 TANDRAGGIRGGGGFGAGGYGSGGGYSSGGGYGTGEYGRGGGYAGNGGYGGRASE 160


>09_04_0734 + 19796297-19796329,19796866-19797129
          Length = 98

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 243 DREMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGP-GGDST 407
           + E GGG  FG  GE   G  G G     +       LTG   G  V G   GD+T
Sbjct: 35  EEECGGGVSFGAAGEDGHGGDGDGDGVNAYLRFPGPTLTGSGDGGVVGGEVDGDAT 90


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 155 SWLRREVSDHQP-IFKVSPTPSRYSRLCHLGQGNGGREGLRDFGRERP 295
           SWL REV  H P  F + P P   S+    GQ N  +E  + F    P
Sbjct: 94  SWLWREVLKHNPDAFTIKPRPLPPSQDPLEGQENQNQEHEKHFAHVAP 141


>06_03_1506 + 30641428-30642168
          Length = 246

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 255 GGGKVFGTLGESDQGLFGKG-GYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGG 419
           GGG  +G+ G    G +G+G GY         G   G   G+   G GG  + YGG
Sbjct: 73  GGGGGYGSGGGEGNGAYGQGYGYGSGNGGGGGGGYGGGGGGS--YGSGGMGSGYGG 126


>07_03_0332 +
           16880184-16881017,16881334-16881462,16882685-16882750,
           16883159-16883224,16884419-16884457,16884858-16885028
          Length = 434

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
 Frame = +3

Query: 249 EMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGX-- 422
           + GGG     L +      G GG  ++F     G   G +  + +LG        GG   
Sbjct: 161 DSGGGGGGAMLQQESSSSTGTGGGGQDFLRP-MGLAAGSSSYSSMLGLSSRMYGGGGTAT 219

Query: 423 --LDWANENAKAAIDLNRXLVAALGSKHQPP 509
             + W + NA AA  L+  +    G+  +PP
Sbjct: 220 MDVPWGSSNAGAARSLSDLISFGGGAMDKPP 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,397,125
Number of Sequences: 37544
Number of extensions: 399180
Number of successful extensions: 1082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)