Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K16
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    94   3e-20
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    94   3e-20
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.081
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.10 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   3.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   5.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   7.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   9.3  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 149 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 310
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRL
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRL 70


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 149 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL 310
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRL
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRL 70


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.081
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +3

Query: 705 PXPPPXDXHGXP*LXPLTXXFPXFXPXXPPXPPPPPP 815
           P PPP    G P   P     P      PP PPPPPP
Sbjct: 750 PVPPPAPIMGGP---PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.75
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 696 KGWPXPPPXDXHGXP*LXPLTXXFPXFXPXXPPXPPPPP 812
           K  P PPP      P   P+    P      PP PPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 0.10
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 789 PPXPPPPPP 815
           PP PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 24.6 bits (51), Expect(2) = 0.10
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 792 PXPPPPPPXXXXP 830
           P PPPPPP    P
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 23.0 bits (47), Expect(2) = 2.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 789 PPXPPPPPP 815
           P  PPPPPP
Sbjct: 236 PAPPPPPPP 244



 Score = 22.6 bits (46), Expect(2) = 2.9
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 714 PPXDXHGXP*LXPLTXXFPXFXPXXPPXPPP 806
           PP          P T     + P  PP PPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 780 PXXPPXPPPPPP 815
           P  PP PPPPPP
Sbjct: 942 PAFPPPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +3

Query: 699 GWPXPPPXDXHGXP*LXPLTXXFPXFXPXXPPXPPPPPPXXXXP 830
           G P  PP      P   PL    P   P  P  P PPP     P
Sbjct: 442 GAPAAPPLPPSA-PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 482 DGIXPRPSFGNTXRLXDDAPKXVLNVSDPST 390
           DG+ P+    +   L D  P+ + NVS PST
Sbjct: 597 DGVHPKSRPSSKVNLVDTYPQTIPNVSKPST 627


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 711 PPPXDXHGXP*LXPLTXXFPXFXPXXPPXPPPPP 812
           PPP          P     P   P  PP  PPPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 768 PXFXPXXPPXPPPPP 812
           P F P   P PPPPP
Sbjct: 16  PGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 780 PXXPPXPPPPPPXXXXP 830
           P   P PPPPPP    P
Sbjct: 5   PPGNPPPPPPPPGFEPP 21


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect(2) = 5.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 768 PXFXPXXPPXPPPPPP 815
           P F     P PPPP P
Sbjct: 232 PIFSSSSTPPPPPPRP 247



 Score = 22.2 bits (45), Expect(2) = 5.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 798 PPPPPPXXXXP 830
           PPPPPP    P
Sbjct: 240 PPPPPPRPSQP 250


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 789 PPXPPPPPP 815
           PP PPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 330 LXRLGRIWEYWDEKQMKXXLCAWV 401
           L   GRIW+YW+E + +     WV
Sbjct: 46  LIACGRIWDYWNEHRSE-YFAFWV 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,891
Number of Sequences: 5004
Number of extensions: 56759
Number of successful extensions: 230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)