Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K16
         (974 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.057
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   5.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   5.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   5.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect(2) = 0.057
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 792 PXPPPPPPXXXXP 830
           P PPPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect(2) = 0.057
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 789 PPXPPPPPP 815
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 780 PXXPPXPPPPP 812
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 789  PPXPPPPP 812
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 792  PXPPPPPP 815
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 792  PXPPPPPP 815
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 152 DERGVTYVFENTDGTL 105
           ++  +TYV++N +GTL
Sbjct: 210 EQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 152 DERGVTYVFENTDGTL 105
           ++  +TYV++N +GTL
Sbjct: 210 EQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 152 DERGVTYVFENTDGTL 105
           ++  +TYV++N +GTL
Sbjct: 261 EQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 152 DERGVTYVFENTDGTL 105
           ++  +TYV++N +GTL
Sbjct: 210 EQTAITYVWKNDEGTL 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,578
Number of Sequences: 438
Number of extensions: 5844
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)