Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K15
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    54   2e-08
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.3  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 41/114 (35%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
 Frame = +2

Query: 128 ERTFIMVKPDGVQRGLVGTIIERFEKKGFN*SV*NSYGHQKNFSSNTTAIWHPGLSSL-G 304
           E+TFI VKPD VQRGL+G II +FE KG+           ++      A  H G      
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYA-EHKGKPFYEK 62

Query: 305 LVKYMSSXXXXXXXXXXXXCCEDWPSXAWAQLNPXDSXXGTIRXDLCIQVGRNI 466
           LV +M+S              +       A  NP DS  GTIR D  I +GRN+
Sbjct: 63  LVGFMASGPVCAMIWEGKQAVKTGRLMLGAS-NPLDSAPGTIRGDYGIDLGRNV 115



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
 Frame = +1

Query: 196 FRKERLQLVGLKFVWPSEELLQQHYSDLASRPFFPGSSKVHEFRTCGP----LWYGRALM 363
           F  +  +L  LKF+ PS +L+++HY++   +PF+    K+  F   GP    +W G+  +
Sbjct: 27  FELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFY---EKLVGFMASGPVCAMIWEGKQAV 83

Query: 364 L*RLAVXCLGATKP 405
             +     LGA+ P
Sbjct: 84  --KTGRLMLGASNP 95


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 213 KPFFSKRSIMVPTRPRCTPSGLT 145
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,748
Number of Sequences: 5004
Number of extensions: 47004
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)