Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K14
         (1065 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.010
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.28 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.48 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 357 LPLPXXPPXRGGXGXXPPXXGGRXXXPPPPXXPXPPP 467
           +P+P   P  GG    PP  G     PPPP  P PPP
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 357 LPLPXXPPXRGGXGXXPPXXGGRXXXPPPPXXPXP 461
           LP P  PP     G  P    GR   PPPP    P
Sbjct: 336 LPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +3

Query: 360 PLPXXPPXRGGXGXXPPXXGGRXXXPPPPXXPXPPPR 470
           P P  PP R   G  PP   G      PP  P PPPR
Sbjct: 311 PPPPPPPSRRNRG-KPPIGNGSSNSSLPP--PPPPPR 344



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = +3

Query: 366 PXXPPXRGGXGXXPPXXGGRXXXPPPPXX-PXPPP 467
           P  PP        PP   G    PP P   P PPP
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 316  PPPPPLXXXPPPNXSPSXXNP 378
            PPPPP+   PPP+  P    P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGP 1727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.148    0.520 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,112,056
Number of Sequences: 5004
Number of extensions: 9822
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)