Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K14
         (1065 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 420 GRXXXPPPPXXPXPPP 467
           G    PP P  P PPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 901 PPHPXXPPPP 930
           PP P  PPPP
Sbjct: 338 PPKPAPPPPP 347


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 360 PLPXXPPXRGG 392
           PLP  PP RGG
Sbjct: 374 PLPPPPPIRGG 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.148    0.520 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,728
Number of Sequences: 438
Number of extensions: 2810
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35547795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)