Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_K13
(1136 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.39
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 2.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 8.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.5
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 8.5
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect(2) = 0.57
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 1014 PPPPPXPPP 1040
PPPPP PPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect(2) = 0.16
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 1017 PPPPXPPPP 1043
PPPP PPPP
Sbjct: 189 PPPPPPPPP 197
Score = 24.2 bits (50), Expect(2) = 2.1
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +3
Query: 984 PXXXPXXPXXPPPPPXPPPP 1043
P P P PP PPPP
Sbjct: 225 PTYTPKQADPLPAPPPPPPP 244
Score = 24.2 bits (50), Expect(2) = 0.16
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 1095 PXPPPPPPXXPP 1130
P PPPPPP P
Sbjct: 236 PAPPPPPPPTLP 247
Score = 22.2 bits (45), Expect(2) = 0.57
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 1095 PXPPPPPPXXP 1127
P P PPPP P
Sbjct: 234 PLPAPPPPPPP 244
Score = 22.2 bits (45), Expect(2) = 2.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 1095 PXPPPPPPXXP 1127
P PPPPP P
Sbjct: 238 PPPPPPPTLPP 248
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.39
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +3
Query: 996 PXXPXXPPPPPXPPPPXXXXXXXXXXXXXXXXXPXPPPPPP 1118
P P PPP PPPP P PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPP----------GVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.69
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 1014 PPPPPXPPPPXXXXXXXXXXXXXXXXXPXPPPPPPXXP 1127
P P P PPP PPPPPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Frame = +3
Query: 984 PXXXPXXPXXPPPPPXP---PPPXXXXXXXXXXXXXXXXXPXPPPPPPXXPP 1130
P P P P P P PPP PPPPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 1014 PPPPPXPPPPXXXXXXXXXXXXXXXXXPXPPPPP 1115
PPPPP PP P PPPPP
Sbjct: 311 PPPPP-PPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 23.8 bits (49), Expect(2) = 1.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 1091 RXXPPPPPPXXPP 1129
R PPPPPP P
Sbjct: 358 RSAPPPPPPRSAP 370
Score = 23.4 bits (48), Expect(2) = 1.3
Identities = 10/32 (31%), Positives = 10/32 (31%)
Frame = +2
Query: 1022 PPPPXXXXXXXXXXXXXXXXXXXRXXPPPPPP 1117
PPPP PPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 1005 PXXPPPPPXPPP 1040
P PPPPP PPP
Sbjct: 942 PAFPPPPPPPPP 953
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 8.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 1014 PPPPPXPPP 1040
PPPPP PPP
Sbjct: 306 PPPPPPPPP 314
Score = 26.2 bits (55), Expect = 8.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 1017 PPPPXPPPP 1043
PPPP PPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Frame = +3
Query: 984 PXXXPXXPXXPPP--PPXPPPP 1043
P P P PP PP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -3
Query: 1131 GGGXXGGGGGGXXXXXXXXXXXXXXXXGXXGGXGGGGXXGXXGXGG 994
GGG GGG GG GG GG G GG
Sbjct: 135 GGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGG 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,867
Number of Sequences: 5004
Number of extensions: 25502
Number of successful extensions: 417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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