Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K13
         (1136 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1095 PXPPPPPP 1118
            P PPPPPP
Sbjct: 341  PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 996  PXXPXXPPPPPXPPPP 1043
            P  P  PPPPP    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 850 PPXPPPPXXPP 882
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 1100 PPPPPPXXPPP 1132
            PP P P  PPP
Sbjct: 338  PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 842  PPPPPXPP 865
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 847  PPPXPPPP 870
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1014 PPPPPXPP 1037
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1017 PPPPXPPP 1040
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1020 PPPXPPPP 1043
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1095 PXPPPPPP 1118
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 1091 RXXPPPPPPXXPPP 1132
            R   PPPPP  PPP
Sbjct: 1351 RQQQPPPPP--PPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1095 PXPPPPPP 1118
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 1129 GGXXGGGGGGXG 1094
            G   GGGGGG G
Sbjct: 42   GANNGGGGGGLG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,719
Number of Sequences: 438
Number of extensions: 6312
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38439819
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)