Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K12
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.40 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   4.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 730 PPXPXXXPPXPPPPXXPPXPPP 795
           PP P   PP   PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
 Frame = +1

Query: 751 PPXP---PPPXXPPXPPPXPXP 807
           PP P   PPP  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.70
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
 Frame = +1

Query: 727 PPPXPXXXPPXPP---PPXXPPXPPPXPXPXXPXXPXP 831
           P P P   P  P    PP     PPP   P  P    P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 289 YKNKSEVPPFVSAEIIERSKSEA 357
           YKN    PPF  A +I +S  E+
Sbjct: 498 YKNADVRPPFTYASLIRQSIIES 520



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
 Frame = +1

Query: 754 PXPPPPXXPPXP----PPXPXPXXPXXPXPXSPRXPRP 855
           P P P   P  P    PP P    P    P +P    P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 679 CIIYVCXVLLXV*LXXPPPXPXXXPPXPPPPXXPP 783
           C ++V   L+   L          PP P PP  PP
Sbjct: 314 CTVFVFMALMEYCLVNIVLGDSDTPPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 760 PPPPXXPPXPPPXPXP 807
           PP P  PP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +1

Query: 727 PPPXPXXXPPXPPPPXXPPXPPPXPXPXXPXXPXPXSPRXPR 852
           P   P   PP P     P   P    P     P P  PR  R
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRR 144



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +1

Query: 727 PPPXPXXXPPXPPPPXXPPXPPPXPXPXXPXXPXPXSPR 843
           P   P   PP P     P   P    P     P P  PR
Sbjct: 129 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPR 167


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 188 HRQDPVQQVHHH 223
           HR  P+ Q HHH
Sbjct: 64  HRDLPIYQSHHH 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,911
Number of Sequences: 438
Number of extensions: 5468
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)