Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K11
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.14 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.55 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    22   6.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 443 GGXXPPPPPXFFFXXXXXXXXPPPPPPG 526
           G   PPPPP  F         PPPPPPG
Sbjct: 7   GNPPPPPPPPGF---EPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 443 GGXXPPPPPXFFFXXXXXXXXPPPPPP 523
           GG  PPPPP            PPPPPP
Sbjct: 759 GGPPPPPPPP---GVAGAGPPPPPPPP 782



 Score = 28.7 bits (61), Expect = 0.97
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 440 GGGXXPPPPPXFFFXXXXXXXXPPPPPP 523
           GG   PPPPP            PPPPPP
Sbjct: 759 GGPPPPPPPPG---VAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 22.2 bits (45), Expect(2) = 6.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 443 GGXXPPPPP 469
           GG  PPPPP
Sbjct: 303 GGLPPPPPP 311



 Score = 21.8 bits (44), Expect(2) = 6.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 506 PPPPPPGXXXFF 541
           PPPPPP    F+
Sbjct: 308 PPPPPPPSNDFW 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,918
Number of Sequences: 5004
Number of extensions: 22386
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)