Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_K10
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 118 1e-27
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 118 1e-27
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 70 5e-13
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 38 0.001
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 35 0.014
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.095
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 31 0.17
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 31 0.17
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 31 0.17
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 30 0.38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.38
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 3.6
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 4.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 118 bits (283), Expect = 1e-27
Identities = 83/205 (40%), Positives = 107/205 (52%), Gaps = 2/205 (0%)
Frame = +2
Query: 278 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITXPXQREKSEKGFLINLIDSPGT 457
+ RF DTR DEQ+R +TIKSTAIS+F E+ + D+ + P FL+NLIDSPG
Sbjct: 53 DARFMDTRADEQERGVTIKSTAISLFAEMTDDDMKDMKEPADGTD----FLVNLIDSPGH 108
Query: 458 R*FLF*SKQLHSV--VTDGAPGGC*LCVWVCVYQTETVLRXAIXXRIKPILFMNKWTVLF 631
F S ++ + VTDGA VCV QTETVLR A+ RI+P++ +NK
Sbjct: 109 VDF---SSEVTAALRVTDGALVVVDTIEGVCV-QTETVLRQALGERIRPVVVVNKVDRAL 164
Query: 632 LSXNLKAEELYQTFQRIVEXVXVXIATYNDDGGPWVRCVSTPXXXXXXXXXXXXXXXLFP 811
L + EELYQ F R+VE V V I+TY D C P F
Sbjct: 165 LELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWA-FT 221
Query: 812 LKQFSEMYADXFXIDLVQPMNXLWG 886
++QF+ YA F ID + M LWG
Sbjct: 222 VRQFANRYAKKFGIDRNKMMQRLWG 246
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 148 RGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 246
R +M K N+RNMSVIAHVDHGKSTLTDSLV K
Sbjct: 10 RNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 118 bits (283), Expect = 1e-27
Identities = 83/205 (40%), Positives = 107/205 (52%), Gaps = 2/205 (0%)
Frame = +2
Query: 278 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITXPXQREKSEKGFLINLIDSPGT 457
+ RF DTR DEQ+R +TIKSTAIS+F E+ + D+ + P FL+NLIDSPG
Sbjct: 53 DARFMDTRADEQERGVTIKSTAISLFAEMTDDDMKDMKEPADGTD----FLVNLIDSPGH 108
Query: 458 R*FLF*SKQLHSV--VTDGAPGGC*LCVWVCVYQTETVLRXAIXXRIKPILFMNKWTVLF 631
F S ++ + VTDGA VCV QTETVLR A+ RI+P++ +NK
Sbjct: 109 VDF---SSEVTAALRVTDGALVVVDTIEGVCV-QTETVLRQALGERIRPVVVVNKVDRAL 164
Query: 632 LSXNLKAEELYQTFQRIVEXVXVXIATYNDDGGPWVRCVSTPXXXXXXXXXXXXXXXLFP 811
L + EELYQ F R+VE V V I+TY D C P F
Sbjct: 165 LELQISQEELYQNFARVVESVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWA-FT 221
Query: 812 LKQFSEMYADXFXIDLVQPMNXLWG 886
++QF+ YA F ID + M LWG
Sbjct: 222 VRQFANRYAKKFGIDRNKMMQRLWG 246
Score = 57.6 bits (133), Expect = 2e-09
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 148 RGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 246
R +M K N+RNMSVIAHVDHGKSTLTDSLV K
Sbjct: 10 RNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQK 42
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 69.7 bits (163), Expect = 5e-13
Identities = 58/146 (39%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Frame = +2
Query: 284 RFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITXPXQREKSEKGFLINLIDSPGTR* 463
RF D R+DE R IT+KS+AIS+FF++ ++ ++ EK +LINLIDSPG
Sbjct: 55 RFLDFREDEITRGITMKSSAISLFFKVISQN--------DEKRVEKDYLINLIDSPGHVD 106
Query: 464 FLF*SKQLHSV--VTDGAPGGC*LCVWVCVYQTETVLRXAIXXRIKPILFMNKWTVLFLS 637
F S ++ S + DGA VC QT TVLR A RIK IL +NK L
Sbjct: 107 F---SSEVSSASRLCDGAFVLVDAVEGVCS-QTITVLRQAWIDRIKVILVINKMDRLITE 162
Query: 638 XNLKAEELYQTFQRIVEXVXVXIATY 715
L E + R+VE V I T+
Sbjct: 163 LKLSPIEAHYHLLRLVEQVNAVIGTF 188
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = +1
Query: 154 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVS 243
+ + NIRN +++AHVDHGK+TL DSL++
Sbjct: 12 LQKNQENIRNFTLLAHVDHGKTTLADSLLA 41
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 166 KRNIRNMSVIAHVDHGKSTLTDSLV 240
+ +RN +VIAH+DHGKSTL+D ++
Sbjct: 55 QNRVRNWAVIAHIDHGKSTLSDCIL 79
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +1
Query: 172 NIRNMSVIAHVDHGKSTLTDSLVSKGRY 255
+IRN+ +IAH+D GK+TLT+ ++ G +
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGF 54
Score = 25.8 bits (54), Expect = 8.3
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +2
Query: 431 INLIDSPGTR*FLF*SKQLHSVVTDGAPGGC*LCVWVCVYQTETVLRXAIXXRIKPILFM 610
INLID+PG F F + V DGA V QT+ V + A I ++F+
Sbjct: 95 INLIDTPGHADFTF-EVERSVAVLDGAVAIIDGSAGV-EAQTKVVWKQATKRGIPKVIFV 152
Query: 611 NK 616
NK
Sbjct: 153 NK 154
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.095
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +1
Query: 160 DKKR--NIRNMSVIAHVDHGKSTLTDSLV 240
DKKR IRN+ + AH+D GK+T T+ ++
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVL 80
Score = 28.7 bits (61), Expect = 1.2
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Frame = +2
Query: 308 EQDRCITIKSTAISMFFELEEKDLVFITXPXQREKSEKGFLINLIDSPGTR*FLF*SKQL 487
E+++ ITI+S A +E + Q+ EK + IN+ID+PG F ++
Sbjct: 108 EREKGITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERA 165
Query: 488 HSVVTDGAPGGC*LCVWVCVY-QTETVLRXAIXXRIKPILFMNK 616
V+ DGA LC V QT TV R + I F+NK
Sbjct: 166 LRVL-DGAV--LVLCAVSGVQSQTITVDRQMRRYNVPRISFVNK 206
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 246
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 246
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 157 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 246
M K++ N+ VI HVD GKST T L+ K
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYK 30
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 30.3 bits (65), Expect = 0.38
Identities = 33/147 (22%), Positives = 60/147 (40%)
Frame = +2
Query: 284 RFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITXPXQREKSEKGFLINLIDSPGTR* 463
R+TDT E++R ++IKST +++ + K F ID+PG
Sbjct: 177 RYTDTHYLERERVMSIKSTPLTLAVS---------------DMKGKTFAFQCIDTPGHVD 221
Query: 464 FLF*SKQLHSVVTDGAPGGC*LCVWVCVYQTETVLRXAIXXRIKPILFMNKWTVLFLSXN 643
F+ ++DG + V + T +++ AI + +L +NK L L
Sbjct: 222 FVD-EVAAPMAISDGVVLVVDVIEGVMI-NTTRIIKHAILHDMPIVLVLNKVDRLILELR 279
Query: 644 LKAEELYQTFQRIVEXVXVXIATYNDD 724
L + Y + +++ V I + D
Sbjct: 280 LPPNDAYHKLRHVIDEVNDNICQISKD 306
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 163 KKRNIRNMSVIAHVDHGKSTLTDSL 237
KK ++ N+ I HVDHGK+TLT ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 3.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +1
Query: 184 MSVIAHVDHGKSTLTDS 234
++++ HVDHGK+TL D+
Sbjct: 174 VTLMGHVDHGKTTLLDA 190
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 198 PRRSRQVNPHGLVGFQGPVSLLVREPERPV 287
P++ R NP +V +GPVS++ E PV
Sbjct: 915 PQKRRVENPKPVVKDEGPVSIVEDEESTPV 944
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,056
Number of Sequences: 5004
Number of extensions: 70425
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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