Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K09
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.33 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   1.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   3.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   6.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect(2) = 0.33
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 639 PXXPXPPPPPP 671
           P  P PPPPPP
Sbjct: 6   PGNPPPPPPPP 16



 Score = 23.4 bits (48), Expect(2) = 0.33
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 648 PXPPPPPPXPXXXK 689
           P  PPPPP P   K
Sbjct: 21  PSQPPPPPPPGYVK 34


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 630 PIFPXXPXPPPPPPXP 677
           PIF     PPPPPP P
Sbjct: 232 PIFSSSSTPPPPPPRP 247


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.4 bits (48), Expect(2) = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 654  PPPPPPXP 677
            PPPPPP P
Sbjct: 1095 PPPPPPPP 1102



 Score = 21.8 bits (44), Expect(2) = 3.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 639  PXXPXPPPPPP 671
            P    PPPPPP
Sbjct: 1091 PSAVPPPPPPP 1101


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 627 IPIFPXXPXPPPPPPXP 677
           +P     P PPPPPP P
Sbjct: 898 LPTIITHPTPPPPPPLP 914



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 633 IFPXXPXPPPPPP 671
           + P  P PPPPPP
Sbjct: 940 VMPAFPPPPPPPP 952


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 648 PXPPPPPPXP 677
           P PPPPP  P
Sbjct: 238 PPPPPPPTLP 247



 Score = 22.2 bits (45), Expect(2) = 4.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 639 PXXPXPPPPPP 671
           P    PPPPPP
Sbjct: 234 PLPAPPPPPPP 244


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 71  YLYLEFLKFSGTIEFR*NEFRTYFELRLRVGAGLSARA 184
           Y+Y+E+  F+ T++    +F +  +  +     L+ARA
Sbjct: 61  YIYVEYSSFAETLDLEVPDFLSQLQTSINYALALAARA 98


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 648 PXPPPPPPXP 677
           P PPPPPP P
Sbjct: 3   PAPPPPPPAP 12


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,268
Number of Sequences: 5004
Number of extensions: 48432
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)