Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_K08
(930 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 30 2.7
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 4.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 6.3
U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-li... 29 6.3
L22447-1|AAB00354.1| 133|Caenorhabditis elegans cysteine protea... 28 8.3
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/69 (30%), Positives = 24/69 (34%)
Frame = -3
Query: 919 GVWXGXNGXGIGGGXAIXTRPWGWEGGSRVCXQXGTKGRRXEXXXDXGXXGKXGAXRGXX 740
G W G G GGG + G GGS+ G G + G G G G
Sbjct: 146 GGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQ-NGGGQGGNQGGGGGRGGNQ 204
Query: 739 AXAXGXWGG 713
G WGG
Sbjct: 205 GGEQGGWGG 213
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Frame = -3
Query: 898 GXGIGGGXAIXTRPWGWEGGSRVCXQXGTKG--RRXEXXXDXGXXGKXGAXRGXXAXAXG 725
G G GG WG +GGS+ Q G++G G G+ G G
Sbjct: 197 GGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRGG 256
Query: 724 XWGG 713
WGG
Sbjct: 257 GWGG 260
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/69 (26%), Positives = 23/69 (33%)
Frame = -3
Query: 919 GVWXGXNGXGIGGGXAIXTRPWGWEGGSRVCXQXGTKGRRXEXXXDXGXXGKXGAXRGXX 740
G + G G G GG WG +GG G + ++ G G G
Sbjct: 239 GAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 298
Query: 739 AXAXGXWGG 713
G WGG
Sbjct: 299 QQQQGGWGG 307
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/69 (26%), Positives = 23/69 (33%)
Frame = -3
Query: 919 GVWXGXNGXGIGGGXAIXTRPWGWEGGSRVCXQXGTKGRRXEXXXDXGXXGKXGAXRGXX 740
G + G G G GG WG +GG G + ++ G G G
Sbjct: 201 GAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 260
Query: 739 AXAXGXWGG 713
G WGG
Sbjct: 261 QQQQGGWGG 269
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/69 (26%), Positives = 23/69 (33%)
Frame = -3
Query: 919 GVWXGXNGXGIGGGXAIXTRPWGWEGGSRVCXQXGTKGRRXEXXXDXGXXGKXGAXRGXX 740
G + G G G GG WG +GG G + ++ G G G
Sbjct: 239 GAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQ 298
Query: 739 AXAXGXWGG 713
G WGG
Sbjct: 299 QQQQGGWGG 307
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 715 PPTXPXXRPXXPXPRRPSPLXXCPXHXPCAS 807
PP P P P P P P P + PC S
Sbjct: 59 PPMCPPPPPPPPPPMCPPPPPPMPSYSPCQS 89
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 694 PRPXLXSPPTXPXXRPXXPXPRRPSPLXXCPXHXPCASPSF 816
P P + PP P P P P P C P PS+
Sbjct: 66 PPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQRPSFYPSY 106
>U29096-1|AAA68406.1| 105|Caenorhabditis elegans Neuropeptide-like
protein protein32 protein.
Length = 105
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 919 GVWXGXNGXGIGGGXAIXTRPWGWEG 842
G W G G G GGG R GW G
Sbjct: 56 GGWGGRGGWGRGGGRGYGGRGGGWGG 81
>L22447-1|AAB00354.1| 133|Caenorhabditis elegans cysteine protease
protein.
Length = 133
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 922 GGVWXGXNGXGIGGGXAIXTRPWGWEGGS 836
GGV+ G +GGG A+ WG + G+
Sbjct: 96 GGVYVHTAGASLGGGHAVKMLGWGVDNGT 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,100
Number of Sequences: 27780
Number of extensions: 258324
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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