Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K05
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   6.2  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   8.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 25/70 (35%), Positives = 29/70 (41%)
 Frame = +2

Query: 626 PPGKLPRALSCSDPAAYRNTCPPFSPSGSVAPFSXLPPGRYLSSV*VVPPQXGAVLPXNP 805
           PP   PR    S P+  R   PP S S +V+     PP     S   +PP   A     P
Sbjct: 361 PPPPPPR----SAPSTGRQP-PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415

Query: 806 PVXTPDRLAP 835
           PV TP  L P
Sbjct: 416 PVPTPPSLPP 425



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 25/72 (34%), Positives = 32/72 (44%)
 Frame = +2

Query: 626 PPGKLPRALSCSDPAAYRNTCPPFSPSGSVAPFSXLPPGRYLSSV*VVPPQXGAVLPXNP 805
           PP   P +L  S P +   + PP  P G+ A    LPP     S  + PP   A +P  P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAA-PPLPP-----SAPIAPP-LPAGMPAAP 467

Query: 806 PVXTPDRLAPYP 841
           P+  P   AP P
Sbjct: 468 PL-PPAAPAPPP 478


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +2

Query: 629 PGKLPRALSCSDPAAYRNTCPPF--SPSGSVAPFSXLPPGRYLSSV*VVPPQXGAVLPXN 802
           P KLP      + + Y     P   +PSGS+ P S  P    L  +  V      V P N
Sbjct: 331 PLKLPDVYGGVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVN 390

Query: 803 PP 808
            P
Sbjct: 391 RP 392


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 801 FXGNTAPXWGGTTYTELRYLPG 736
           F  N  P W GT Y   RY PG
Sbjct: 101 FLKNGFPRWKGTGYLYSRYRPG 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,900
Number of Sequences: 5004
Number of extensions: 64300
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)