Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K04
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    27   3.4  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   4.5  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   7.8  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   7.8  

>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 281 SAILDFSVCDRRNRVTVFVSESDFRNLFS 195
           S+ +DFSV D   +V VF +  DF ++F+
Sbjct: 47  SSFIDFSVWDFPGQVDVFDAAFDFESIFT 75


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -3

Query: 302  GVEHSLPSAILDFSVCDRRNRVTVFVSESDFRNLFSAFPCNLCPRNQDG 156
            G E S   + +D ++C+RR         ++  +  S F C +C     G
Sbjct: 1358 GEEFSPRDSFIDCTICERRFHYDCVGLNNEIADSVSKFTCPICMEQSGG 1406


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 237 DPIPSIAYTEIENGTWQRVFNTVLDLMPKHACREYKAAFEKLQ 365
           DPI   A T+++    +++ N   D +      E KAA EKL+
Sbjct: 498 DPIDEYAVTQLKEFEGKKLVNITKDGLELEETDEEKAAREKLE 540


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 198 KQIAEIAFAYKYGDPIPSIAYTE 266
           KQ++++ F YK+ D + S++Y +
Sbjct: 235 KQVSDVRFHYKHQDLLASVSYDQ 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,503,859
Number of Sequences: 5004
Number of extensions: 75129
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)