Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_K03
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   9.7  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   9.7  

>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 156 FALVLALRMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEV 287
           FAL +  R+ ++ P+P+        ++ R I D + + G   EV
Sbjct: 170 FALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 311 SYSFSRTEDLDRRARFDDAITDVPAHFFNFLEDLPP 204
           +YSFS+ ED+     F   I D     FN+  D PP
Sbjct: 779 TYSFSKREDVPIEKLFSKTIRDK----FNWAADTPP 810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,270
Number of Sequences: 5004
Number of extensions: 32912
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)